ggKbase home page

BD02T64_scaffold_2064

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_2064_1
Paraglaciecola arctica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

913..2148
DNA (1236bp) protein (412aa)
Isoaspartyl dipeptidase {ECO:0000256|PIRNR:PIRNR001238}; EC=3.4.19.- {ECO:0000256|PIRNR:PIRNR001238};; TaxID=493475 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonad
isoaspartyl dipeptidase n=1 Tax=Leucothrix mucor RepID=UPI0003B3CA49
iadA; isoaspartyl dipeptidase
BD02T64_scaffold_2064_2
Glaciecola punicea, Glaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2193..3068
DNA (876bp) protein (292aa)
cphB; cyanophycinase (EC:3.-.-.-)
Cyanophycinase {ECO:0000313|EMBL:GAB56185.1}; EC=3.4.15.6 {ECO:0000313|EMBL:GAB56185.1};; TaxID=1121923 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Glaci
Cyanophycinase n=1 Tax=Glaciecola punicea DSM 14233 = ACAM 611 RepID=H5TD08_9ALTE rbh
BD02T64_scaffold_2064_3
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3106..5907
DNA (2802bp) protein (934aa)
Cyanophycin synthetase {ECO:0000313|EMBL:GAC31306.1}; EC=6.-.-.- {ECO:0000313|EMBL:GAC31306.1};; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae
Cyanophycin synthetase n=1 Tax=Glaciecola polaris LMG 21857 RepID=K6Z554_9ALTE rbh
cphA; cyanophycin synthetase
BD02T64_scaffold_2064_4
Paraglaciecola psychrophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5919..7658
DNA (1740bp) protein (580aa)
Mur ligase family protein n=1 Tax=Glaciecola psychrophila 170 RepID=K6ZRG2_9ALTE
mur ligase family protein
Mur ligase family protein {ECO:0000313|EMBL:AGH46758.1}; TaxID=1129794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglacieco
BD02T64_scaffold_2064_5
unknown

Not on your lists

comp(7581..7766)
DNA (186bp) protein (62aa)

This feature has no annotations

BD02T64_scaffold_2064_6
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7882..8058)
DNA (177bp) protein (59aa)
IS3 family element, transposase orfB n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JQH1_9RHOB
IS3 family element, transposase orfB {ECO:0000313|EMBL:EBA04011.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae b
IS3 family transposase
BD02T64_scaffold_2064_7
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9090..10046)
DNA (957bp) protein (319aa)
Transcriptional regulator, LysR family protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FJY1_9RHOB rbh
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EDM72699.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" sou
LysR family transcriptional regulator
BD02T64_scaffold_2064_8
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10172..11539
DNA (1368bp) protein (456aa)
putative aminotransferase (EC:2.6.1.-)
Aminotransferase class-III {ECO:0000313|EMBL:CAM76190.1}; EC=2.6.1.- {ECO:0000313|EMBL:CAM76190.1};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirilla
Putative aminotransferase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EW53_9PROT
BD02T64_scaffold_2064_9
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11563..12990
DNA (1428bp) protein (476aa)
Putative aldehyde dehydrogenase n=1 Tax=Bordetella bronchiseptica Bbr77 RepID=K4TER9_BORBO rbh
aldehyde dehydrogenase
Putative aldehyde dehydrogenase {ECO:0000313|EMBL:CCN24874.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella br
BD02T64_scaffold_2064_10
unknown

Not on your lists

13116..15425
DNA (2310bp) protein (770aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000380A4A2 rbh
Uncharacterized protein {ECO:0000313|EMBL:CPR18402.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
hypothetical protein
BD02T64_scaffold_2064_11
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15579..16328)
DNA (750bp) protein (250aa)
Glutamine ABC transporter, ATP-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP09_RUEPO rbh
glnQ; glutamine ABC transporter, ATP-binding protein rbh
Glutamine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAV96279.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source
BD02T64_scaffold_2064_12
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16341..17240)
DNA (900bp) protein (300aa)
UPI0003D6B299 related cluster n=1 Tax=unknown RepID=UPI0003D6B299 rbh
amino acid ABC transporter membrane protein 2, PAAT family rbh
Uncharacterized protein {ECO:0000313|EMBL:AHD08923.1}; TaxID=1423144 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter galla
BD02T64_scaffold_2064_13
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17230..17985)
DNA (756bp) protein (252aa)
UPI0003D69DDA related cluster n=1 Tax=unknown RepID=UPI0003D69DDA rbh
amino acid ABC transporter membrane protein 1, PAAT family rbh
Uncharacterized protein {ECO:0000313|EMBL:AHD08922.1}; TaxID=1423144 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter galla
BD02T64_scaffold_2064_14
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18023..18868)
DNA (846bp) protein (282aa)
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP12_RUEPO rbh
polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein rbh
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:AAV96276.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterale
BD02T64_scaffold_2064_15
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19041..19784
DNA (744bp) protein (248aa)
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, putative n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP13_RUEPO rbh
polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, putative rbh
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, putative {ECO:0000313|EMBL:AAV96275.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhod
BD02T64_scaffold_2064_16
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19781..20836
DNA (1056bp) protein (352aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
sensor histidine kinase/response regulator (EC:2.7.3.-) rbh
Sensor histidine kinase/response regulator n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP14_RUEPO rbh
BD02T64_scaffold_2064_17
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20854..22461
DNA (1608bp) protein (536aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
sensor histidine kinase/response regulator (EC:2.7.3.-)
Sensor histidine kinase/response regulator n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP14_RUEPO
BD02T64_scaffold_2064_18
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22449..23261)
DNA (813bp) protein (271aa)
DNA-binding response regulator, LysR family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP15_RUEPO rbh
DNA-binding response regulator, LysR family rbh
DNA-binding response regulator, LysR family {ECO:0000313|EMBL:AAV96273.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="R
BD02T64_scaffold_2064_19
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23456..24484)
DNA (1029bp) protein (343aa)
Putative NADP-dependent oxidoreductase yncb {ECO:0000313|EMBL:EET47203.1}; EC=1.-.-.- {ECO:0000313|EMBL:EET47203.1};; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacteral
Putative NADP-dependent oxidoreductase yncb n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DDM7_9RHOB rbh
hypothetical protein
BD02T64_scaffold_2064_20
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24925..26187)
DNA (1263bp) protein (421aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAM
UPI0003CE303A related cluster n=1 Tax=unknown RepID=UPI0003CE303A
glycine hydroxymethyltransferase
BD02T64_scaffold_2064_21
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26299..27198
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family protein n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PLS5_PSEUV
Uncharacterized protein {ECO:0000313|EMBL:KIC15040.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG
transcriptional regulator, LysR family protein
BD02T64_scaffold_2064_22
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27195..29981)
DNA (2787bp) protein (929aa)
DNA polymerase n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0003117428
DNA polymerase {ECO:0000313|EMBL:KIC22071.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
DNA polymerase
BD02T64_scaffold_2064_23
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30046..30687)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RMF1_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEB83122.1}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobact
hypothetical protein
BD02T64_scaffold_2064_24
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30738..30923)
DNA (186bp) protein (62aa)
Uncharacterized protein n=5 Tax=Rhodobacter RepID=A3PN74_RHOS1
Uncharacterized protein {ECO:0000313|EMBL:KGB81307.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI2
hypothetical protein
BD02T64_scaffold_2064_25
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30996..31373)
DNA (378bp) protein (126aa)
Possible Histidine triad (HIT) protein n=2 Tax=Sulfitobacter RepID=A3SA57_9RHOB
Possible Histidine triad (HIT) protein {ECO:0000313|EMBL:EAP81392.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="S
HIT-like protein
BD02T64_scaffold_2064_26
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31394..31843)
DNA (450bp) protein (150aa)
EpsK domain protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JNB3_9RHOB
Glycosyl transferase {ECO:0000313|EMBL:KAJ54668.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium muco
beta-1,6-N-acetylglucosaminyltransferase enzyme-like protein
Displaying 26 items

View Taxonomy