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BD02T64_scaffold_2604

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_2604_1
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..635)
DNA (633bp) protein (211aa)
ATP-dependent protease La Type II (EC:3.4.21.53)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N2Q4_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EEF80937.1}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylo
BD02T64_scaffold_2604_2

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679..981
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T1E5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKM80090.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_2604_3

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comp(1001..1648)
DNA (648bp) protein (216aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T1E6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM80091.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
BD02T64_scaffold_2604_4
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1664..2725)
DNA (1062bp) protein (354aa)
Diguanylate cyclase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XLV1_METNJ rbh
diguanylate cyclase
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI85370.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiacea
BD02T64_scaffold_2604_5

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comp(2820..3776)
DNA (957bp) protein (319aa)
CheW-like domain protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N2Q8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKM80093.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
chemotaxis protein CheV
BD02T64_scaffold_2604_6
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4238..6406
DNA (2169bp) protein (723aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=637616 species="Bacteria; Proteobacteria; Gamm
Ribonuclease R n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N2Q9_9GAMM rbh
3'-to-5' exoribonuclease RNase R
BD02T64_scaffold_2604_7
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6656..7588
DNA (933bp) protein (311aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N2R0_9GAMM rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEF80966.1}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylo
signal transduction protein
BD02T64_scaffold_2604_8
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8085..8420
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Shewanella oneidensis (strain MR-1) RepID=Q8EIT9_SHEON rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM07538.1}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thi
hypothetical protein
BD02T64_scaffold_2604_9
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8735..11269
DNA (2535bp) protein (845aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N6D2_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EEF79197.1}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylo
PAS sensor diguanylate cyclase/phosphodiesterase
BD02T64_scaffold_2604_10
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

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11330..11932
DNA (603bp) protein (201aa)
hypothetical protein Tax=GWC1_Treponema_61_84_curated
Conserved domain protein id=3495183 bin=GWF2_Bacteroidetes_41_31 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes rbh
hypothetical protein
BD02T64_scaffold_2604_11
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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12162..14423
DNA (2262bp) protein (754aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5Y8_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EEF80023.1}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylo
putative membrane associated signaling protein, GGDEF family protein
BD02T64_scaffold_2604_12

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comp(14432..16159)
DNA (1728bp) protein (576aa)
Protein kinase domain n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N4L1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN50315.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Serine/threonine protein kinase
BD02T64_scaffold_2604_13
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16228..17091)
DNA (864bp) protein (288aa)
Nitrate/nitrite transporter n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T1F4_9GAMM
Nitrate/nitrite transporter {ECO:0000313|EMBL:EGL53040.1}; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophag
nitrate/nitrite transporter
Displaying 13 items

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