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BD02T64_scaffold_1253

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1253_1
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..394)
DNA (393bp) protein (131aa)
tRNA (mo5U34)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01590}; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_01590};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
tRNA methyltransferase n=1 Tax=Colwellia piezophila RepID=UPI00036611D9
methyltransferase
BD02T64_scaffold_1253_2
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(455..1204)
DNA (750bp) protein (250aa)
tRNA (cmo5U34)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01589}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_01589};; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
tRNA methyltransferase n=1 Tax=Colwellia piezophila RepID=UPI00036D62F6
methyltransferase
BD02T64_scaffold_1253_3
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1783..3549
DNA (1767bp) protein (589aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:KGJ93568.1}; EC=6.1.1.12 {ECO:0000313|EMBL:KGJ93568.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae;
Aspartate--tRNA ligase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SYD_COLP3
BD02T64_scaffold_1253_4
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3638..4165
DNA (528bp) protein (176aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Holliday junction resolvase n=1 Tax=Colwellia piezophila RepID=UPI000375194A
BD02T64_scaffold_1253_5
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4309..4947
DNA (639bp) protein (213aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=RUVA_COLP3
ruvA; Holliday junction DNA helicase RuvA
BD02T64_scaffold_1253_6
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5019..6026
DNA (1008bp) protein (336aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria;
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction DNA helicase RuvB n=1 Tax=Colwellia piezophila RepID=UPI0003797017
BD02T64_scaffold_1253_7
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6250..6759)
DNA (510bp) protein (170aa)
ATP-binding protein n=1 Tax=Colwellia piezophila RepID=UPI0003821D87
Uncharacterized protein {ECO:0000313|EMBL:KGJ89889.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_1253_8
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6836..9364
DNA (2529bp) protein (843aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI0003674273
DNA internalization-related competence protein ComEC/Rec2
Uncharacterized protein {ECO:0000313|EMBL:KJE41024.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas virid
BD02T64_scaffold_1253_9
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9458..11218
DNA (1761bp) protein (587aa)
Lipid A export ATP-binding/permease protein MsbA 1 {ECO:0000255|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000255|HAMAP-Rule:MF_01703};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria
Lipid A export ATP-binding/permease protein MsbA 1 n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=MSBA1_COLP3
msbA; lipid ABC transporter ATP-binding/permease MsbA
BD02T64_scaffold_1253_10
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11279..12313
DNA (1035bp) protein (345aa)
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase {ECO:0000255|HAMAP-Rule:MF_00409}; EC=2.7.1.130 {ECO:0000255|HAMAP-Rule:MF_00409};; Lipid A 4'-kinase {ECO:0000255|HAMAP-Rule:MF_00409}; TaxID=167879 species="Bacteria;
Tetraacyldisaccharide 4'-kinase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=LPXK_COLP3
BD02T64_scaffold_1253_11
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12390..12596
DNA (207bp) protein (69aa)
UPF0434 protein CPS_2127 n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Y2127_COLP3
UPF0434 protein SG34_29150 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomona
hypothetical protein
BD02T64_scaffold_1253_12
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12608..13432
DNA (825bp) protein (275aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-k
kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=KDSB_COLP3
BD02T64_scaffold_1253_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13511..14086)
DNA (576bp) protein (192aa)
SCP-2 sterol transfer family protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483B2_COLP3
Sterol-binding domain protein {ECO:0000313|EMBL:KGJ89883.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrer
SCP-2 sterol transfer family protein
BD02T64_scaffold_1253_14
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14243..15238
DNA (996bp) protein (332aa)
U32 family peptidase (EC:3.4.-.-)
Peptidase, U32 family {ECO:0000313|EMBL:AAZ27291.1}; EC=3.4.-.- {ECO:0000313|EMBL:AAZ27291.1};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Col
Peptidase, U32 family n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483B0_COLP3
BD02T64_scaffold_1253_15
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15383..16285
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483A9_COLP3
Peptidase U32 {ECO:0000313|EMBL:KGJ93551.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (Vibrio
hypothetical protein
BD02T64_scaffold_1253_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16357..17508
DNA (1152bp) protein (384aa)
cupin n=1 Tax=Colwellia piezophila RepID=UPI000370EC30
Transcription factor jumonji jmjC domain-containing protein {ECO:0000313|EMBL:KGJ89880.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia
hypothetical protein
BD02T64_scaffold_1253_17
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17527..18324
DNA (798bp) protein (266aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae
pseudouridine synthase n=1 Tax=Colwellia piezophila RepID=UPI00037C7955
rsuA; ribosomal small subunit pseudouridine synthase A
BD02T64_scaffold_1253_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18592..19599)
DNA (1008bp) protein (336aa)
isocitrate dehydrogenase (EC:1.1.1.41)
Isocitrate dehydrogenase, NAD-dependent {ECO:0000313|EMBL:AAZ24724.1}; EC=1.1.1.41 {ECO:0000313|EMBL:AAZ24724.1};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
Isocitrate dehydrogenase, NAD-dependent n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47YA6_COLP3
BD02T64_scaffold_1253_19
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19874..20299)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00037F157E
Uncharacterized protein {ECO:0000313|EMBL:KGJ92973.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_1253_20
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20412..21299)
DNA (888bp) protein (296aa)
Flap endonuclease Xni {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS00008260}; Short=FEN {ECO:0000256|HAMAP-Rule:MF_01192};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01192, ECO:0000256|SAAS:SAAS
xni; exonuclease IX (EC:3.1.11.-)
Flap endonuclease Xni n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=XNI_COLP3
BD02T64_scaffold_1253_21
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21303..22649)
DNA (1347bp) protein (449aa)
LOG family protein ygdH n=1 Tax=Colwellia piezophila RepID=UPI000366829D
Uncharacterized protein {ECO:0000313|EMBL:KGJ96129.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
lysine decarboxylase
BD02T64_scaffold_1253_22
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22685..24301)
DNA (1617bp) protein (539aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00035E2B00
Diguanylate cyclase {ECO:0000313|EMBL:KGJ96128.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (V
GGDEF domain-containing protein
BD02T64_scaffold_1253_23
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24561..26372
DNA (1812bp) protein (604aa)
Putative peptidase, M61 family n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47YB2_COLP3
M61 family peptidase
Putative peptidase, M61 family {ECO:0000313|EMBL:AAZ25897.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychr
BD02T64_scaffold_1253_24
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26457..27113)
DNA (657bp) protein (219aa)
Molybdenum cofactor cytidylyltransferase {ECO:0000313|EMBL:GAC33821.1}; EC=2.7.7.76 {ECO:0000313|EMBL:GAC33821.1};; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadale
Molybdenum cofactor cytidylyltransferase n=1 Tax=Glaciecola polaris LMG 21857 RepID=K6ZCN3_9ALTE rbh
hypothetical protein
BD02T64_scaffold_1253_25
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27110..28228)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00037EC440
Uncharacterized protein {ECO:0000313|EMBL:KJE40060.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actin
putative xanthine dehydrogenase accessory factor
BD02T64_scaffold_1253_26
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28245..30437)
DNA (2193bp) protein (731aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000371D18D
Isoquinoline oxidoreductase subunit beta {ECO:0000313|EMBL:KJE47282.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Th
hypothetical protein
BD02T64_scaffold_1253_27
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30439..30933)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000380AC04
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KJE42958.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas acti
(2Fe-2S)-binding domain-containing protein
Displaying 27 items

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