name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
BD02T64_BD1-5_chromosome_final_ori_start_1
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
183..1463
|
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2A2D0_9BACT
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD44124.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
|
|
BD02T64_BD1-5_chromosome_final_ori_start_2
GWA2_OD1_39_41, Moranbacteria, Parcubacteria, Bacteria
|
Not on your lists |
1677..3002
|
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
rbh
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KKR22102.1}; TaxID=1618695 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWA2_39_41.;"
Serine hydroxymethyltransferase id=2823248 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
rbh
|
Part of complete one pool by folate system
Jill Banfield
(3/12/19)
|
BD02T64_BD1-5_chromosome_final_ori_start_3
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
3112..3666
|
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2F6R4_9BACT
Tax=ACD2
|
HHpred suggests PRK13182 racA polar chromosome segregation protein (99.9% prob). Other top hits are also regulators. Hit covers most of the protein
Jill Banfield
(8/30/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_trna_1
unknown
|
Not on your lists |
3734..3805
|
transferRNA Arg
|
|
BD02T64_BD1-5_chromosome_final_ori_start_4
RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated, Falkowbacteria, Parcubacteria, Bacteria
|
Not on your lists |
comp(3858..5660)
|
DNA mismatch repair protein MutL n=1 Tax=Caloramator australicus RC3 RepID=I7K503_9CLOT
rbh
DNA mismatch repair protein MutL
Tax=RIFOXYC2_FULL_OD1_Falkowbacteria_36_12_curated
|
|
BD02T64_BD1-5_chromosome_final_ori_start_5
unknown
|
Not on your lists |
comp(5732..5959)
|
This feature has no annotations |
No strong hit in HHpred. Some hints of transport activity. Weak suggestion: Ribosomal-protein-S5-alanine acetyltransferase
Jill Banfield
(8/30/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_6 |
Not on your lists |
comp(5990..6463)
|
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PIB3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK96699.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
|
High confidence score for Thioredoxin-like protein via HHpred.
Jill Banfield
(8/31/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_7
CG_GN02-02, Gracilibacteria, Bacteria
|
Not on your lists |
6591..6953
|
50S ribosomal protein L19 n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GUM0_9BACT
50S ribosomal protein L19
Tax=CG_GN02-02
|
|
BD02T64_BD1-5_chromosome_final_ori_start_8
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7068..7841
|
Uncharacterized protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VD57_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJB92039.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
methyltransferase
|
possible catechol O_methyltransferase 2.1.1.6
Jill Banfield
(8/25/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_9
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
7961..9418
|
tex:Teth514_0540 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=69573 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
rbh
|
|
BD02T64_BD1-5_chromosome_final_ori_start_10
unknown
|
Not on your lists |
9485..10468
|
This feature has no annotations |
< 64% confident HHpred over short regions (pore domain/ antigen)
Jill Banfield
(8/31/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_11
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(10465..11958)
|
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BCD8_9BACT
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD66458.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
DNA internalization-related competence protein ComEC/Rec2. Protein has 12 transmembrane domains. Not predicted to be a transporter y TrSSP.
|
12 transmembrane domains
Jill Banfield
(3/11/17)
|
BD02T64_BD1-5_chromosome_final_ori_start_12
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(11972..12766)
|
Weak hit to phosphatidylglycerol:prolipoprotein diacylglycerol transferase, a membrane protein.
Predicted cation / anion transporter (trSSP) with 7 transmembrane domains
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BW20_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD66459.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
|
weak hit to phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Has 7 transmembrane domains
Jill Banfield
(8/25/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_13
Candidatus Saccharibacteria oral taxon TM7x, Candidatus Saccharibacteria, Bacteria
|
Not on your lists |
comp(12862..13419)
|
elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1476577 species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria oral taxon TM7x.;"
elongation factor P; K02356 elongation factor EF-P id=124322 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
|
|
BD02T64_BD1-5_chromosome_final_ori_start_14
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(13459..14943)
|
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Ribonuclease Y n=1 Tax=uncultured bacterium (gcode 4) RepID=K1Z3M4_9BACT
rbh
hypothetical protein
rbh
|
alternative: Membrane-associated HD superfamily hydrolase
Jill Banfield
(3/10/17)
|
BD02T64_BD1-5_chromosome_final_ori_start_15
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(15222..17366)
|
Elongation factor G n=1 Tax=uncultured bacterium (gcode 4) RepID=K2G791_9BACT
rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
fusA; elongation factor G
rbh
|
|
BD02T64_BD1-5_chromosome_final_ori_start_16
ACD49, Gracilibacteria, Bacteria
|
Not on your lists |
comp(17499..18146)
|
coiled-coil 140..161 id=69604 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Tax=ACD49
|
low probability score for YjiN via HHpred
Jill Banfield
(8/31/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_17
Clostridium sp. CAG:273, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria
|
Not on your lists |
comp(18231..19106)
|
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262789 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:273.;"
prmC; protein-(glutamine-N5) methyltransferase, release factor-specific (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Clostridium sp. CAG:273 RepID=R7L5N5_9CLOT
|
|
BD02T64_BD1-5_chromosome_final_ori_start_18
CG_GN02-01, Gracilibacteria, Bacteria
|
Not on your lists |
comp(19109..19870)
|
Possible permease; 6 transmembrane domains (hhbits) but TrSSP say not a transporter
ABC-2 type transport system permease protein (HMM)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2G7D2_9BACT
hypothetical protein
|
ABC transporter permease (moderately well supported)
Jill Banfield
(3/10/17)
|
BD02T64_BD1-5_chromosome_final_ori_start_19
CG_GN02-01, Gracilibacteria, Bacteria
|
Not on your lists |
comp(19858..20826)
|
Methionyl-tRNA formyltransferase n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XXC4_9BACT
methionyl-tRNA formyltransferase
Tax=CG_GN02-01
|
|
BD02T64_BD1-5_chromosome_final_ori_start_20
unknown
|
Not on your lists |
comp(20829..21524)
|
This feature has no annotations |
High probability HHpred for Type II secretion system protein, protein H or FimT or PulG or PilE or GspG (hit only over first half of protein)
Jill Banfield
(8/31/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_21
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(21528..22625)
|
Glycosyltransferse OR cation transporter (TrSSP) with 7 transmembrane domains
Glycosyl transferase family 4 n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GEM5_9BACT
Glycosyl transferase family 4 {ECO:0000313|EMBL:EKE28679.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase
|
Has 10 transmembrane domains
Jill Banfield
(3/11/17)
|
BD02T64_BD1-5_chromosome_final_ori_start_22
unknown
|
Not on your lists |
comp(22627..23304)
|
Membrane-associated protein with 7 transmembrane domains
|
Nothing by HHpred
Jill Banfield
(8/31/16)
|
BD02T64_BD1-5_chromosome_final_ori_start_23
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria
|
Not on your lists |
comp(23371..24438)
|
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1236976 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus pini JCM 16418.;"
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Clostridium leptum DSM 753 RepID=A7VU42_9CLOT
rbh
|
|
BD02T64_BD1-5_chromosome_final_ori_start_24
unknown
|
Not on your lists |
24654..24827
|
This feature has no annotations |
Nothing from HHPred or other
Jill Banfield
(3/10/17)
|
BD02T64_BD1-5_chromosome_final_ori_start_25
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria
|
Not on your lists |
24934..26904
|
Diguanylate cyclase n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3HB75_ILYPC
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADO82226.1}; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
|
|
BD02T64_BD1-5_chromosome_final_ori_start_26
CG_GN02-01, Gracilibacteria, Bacteria
|
Not on your lists |
27032..27688
|
50S ribosomal protein L3 n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YDI0_9BACT
50S ribosomal protein L3
Tax=CG_GN02-01
|
|
BD02T64_BD1-5_chromosome_final_ori_start_27
GWA2_PER_44_7, Peregrinibacteria, Bacteria
|
Not on your lists |
27709..28332
|
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=31748 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
50S ribosomal protein L4 {ECO:0000313|EMBL:KKT75101.1}; TaxID=1619057 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_44_7.;"
rplD; putative 50S ribosomal protein L4
|
|
BD02T64_BD1-5_chromosome_final_ori_start_28
ACD78, Gracilibacteria, Bacteria
|
Not on your lists |
28352..28648
|
ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 id=124612 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
rplW; 50S ribosomal protein L23
Tax=ACD78
|
|
BD02T64_BD1-5_chromosome_final_ori_start_29
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
28713..29558
|
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=34012 bin=ACD2 species=ACD2 genus=ACD2 taxon_order=ACD2 taxon_class=ACD2 phylum=BD1-5 tax=ACD2 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ribosomal protein L2, bacterial/organellar
rbh
|