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ACD2_19

Alias: ACD2_1699.26296.59

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD2_19_1
unknown

Not on your lists

comp(2..67)
DNA (66bp) protein (22aa)
2..67 - (rbs_motif=TACAA rbs_spacer=7bp)
ACD2_19_2
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(39..1127)
DNA (1089bp) protein (363aa)
GTP-binding protein YchF n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6D0_9BACT (db=UNIREF evalue=1.0e-94 bit_score=350.0 identity=50.27 coverage=98.8980716253444)
GTP-binding protein YchF
GTP-binding protein YchF
GTP-binding protein YchF
ACD2_19_3
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(1140..2192)
DNA (1053bp) protein (351aa)
1140..2192 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD2
ACD2_19_4
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(2268..2516)
DNA (249bp) protein (83aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions 4..23 Tax=ACD2
ACD2_19_5
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(2581..3867)
DNA (1287bp) protein (429aa)
hypothetical protein
seg (db=Seg db_id=seg from=184 to=199)
seg (db=Seg db_id=seg from=2 to=12)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE--D-ALANYL-D- ALANYL LIGASE (db=HMMPanther db_id=PTHR23135:SF3 from=27 to=405 evalue=1.6e-34 interpro_id=IPR005863 interpro_description=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activ
ACD2_19_6
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(3869..6316)
DNA (2448bp) protein (816aa)
hypothetical protein (db=KEGG evalue=2.0e-09 bit_score=68.9 identity=25.21 coverage=38.7254901960784)
seg (db=Seg db_id=seg from=722 to=736)
seg (db=Seg db_id=seg from=185 to=200)
seg (db=Seg db_id=seg from=68 to=95)
ACD2_19_7
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(6434..11824)
DNA (5391bp) protein (1797aa)
PKD domain containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=1431 to=1453)
seg (db=Seg db_id=seg from=92 to=109)
ACD2_19_8
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(11908..13302)
DNA (1395bp) protein (465aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
seg (db=Seg db_id=seg from=11 to=22)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=35 to=418 evalue=4.0e-17)
SBP_bac_1 (db=HMMPfam db_id=PF01547 from=55 to=365 evalue=3.4e-05 interpro_id=IPR006059 interpro_description=Bacterial extracellular solute-binding, family 1 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810))
ACD2_19_9

Not on your lists

comp(13325..13777)
DNA (453bp) protein (151aa)
seg (db=Seg db_id=seg from=90 to=101)
HIT-like (db=superfamily db_id=SSF54197 from=2 to=146 evalue=1.6e-20 interpro_id=IPR011146 interpro_description=Histidine triad-like motif GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=Gene3D db_id=G3DSA:3.30.428.10 from=2 to=100 evalue=1.9e-10 interpro_id=IPR011151 interpro_description=Histidine triad motif GO=Molecular Function: catalytic activity (GO:0003824))
HIT (db=HMMPfam db_id=PF01230 from=14 to=100 evalue=5.1e-09 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
ACD2_19_10
ACD2, Gracilibacteria, Bacteria

Not on your lists

13800..14210
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=67 to=77)
seg 67..77 Tax=ACD2
ACD2_19_11
ACD2, Gracilibacteria, Bacteria

Not on your lists

14229..15515
DNA (1287bp) protein (429aa)
coiled-coil (db=Coil db_id=coil from=342 to=363 evalue=NA)
coiled-coil 342..363 Tax=ACD2
ACD2_19_12
unknown

Not on your lists

16404..17063
DNA (660bp) protein (220aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP71_9BACT (db=UNIREF evalue=8.0e-35 bit_score=150.0 identity=36.36 coverage=98.6363636363636)
dimethylallyladenosine tRNA methylthiotransferase
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=1 to=165 evalue=6.8e-36)
RADICAL SAM PROTEINS (db=HMMPanther db_id=PTHR11918 from=4 to=217 evalue=1.6e-34 interpro_id=IPR005839 interpro_description=Methylthiotransferase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: RNA modification (GO:0009451), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
test kelly wrighton (11/15/12)
ACD2_19_13
ACD2, Gracilibacteria, Bacteria

Not on your lists

comp(17066..17218)
DNA (153bp) protein (51aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=ACD2
ACD2_19_14
ACD2, Gracilibacteria, Bacteria

Not on your lists

17274..20033
DNA (2760bp) protein (920aa)
Preprotein translocase, SecA subunit n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGA5_CLOCL (db=UNIREF evalue=0.0 bit_score=652.0 identity=45.3 coverage=81.8478260869565)
preprotein translocase, SecA subunit
preprotein translocase, SecA subunit
preprotein translocase, SecA subunit
ACD2_19_15
ACD2, Gracilibacteria, Bacteria

Not on your lists

20068..20910
DNA (843bp) protein (281aa)
lepB; signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] (db=KEGG evalue=7.0e-11 bit_score=71.2 identity=32.28 coverage=51.2455516014235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
seg (db=Seg db_id=seg from=61 to=71)
seg (db=Seg db_id=seg from=201 to=217)
ACD2_19_16
unknown

Not on your lists

20953..21522
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CR87_9FIRM (db=UNIREF evalue=3.0e-10 bit_score=68.2 identity=24.42 coverage=83.1578947368421)
metal dependent phosphohydrolase; K06950 (db=KEGG evalue=1.0e-09 bit_score=66.2 identity=35.29 coverage=59.4736842105263)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CR87_9FIRM Tax=ACD2
ACD2_19_17
unknown

Not on your lists

21497..22357
DNA (861bp) protein (287aa)
truB; pseudouridylate synthase (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3H8_9PLAN (db=UNIREF evalue=3.0e-33 bit_score=145.0 identity=35.41 coverage=70.0348432055749)
seg (db=Seg db_id=seg from=17 to=31)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=2 to=218 evalue=1.1e-45 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD2_19_18

Not on your lists

comp(22363..23007)
DNA (645bp) protein (215aa)
hypothetical protein
ENDONUCLEASE_III_1 (db=PatternScan db_id=PS00764 from=190 to=206 evalue=0.0 interpro_id=IPR004035 interpro_description=Endonuclease III, iron-sulphur binding site GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
DNA-glycosylase (db=superfamily db_id=SSF48150 from=3 to=212 evalue=5.1e-57 interpro_id=IPR011257 interpro_description=DNA glycosylase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III (db=HMMPanther db_id=PTHR10359 from=25 to=210 evalue=2.4e-51)
ACD2_19_19
unknown

Not on your lists

23115..23915
DNA (801bp) protein (267aa)
Mg-dependent DNase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EJY6_PEDAC (db=UNIREF evalue=4.0e-45 bit_score=184.0 identity=42.22 coverage=95.1310861423221)
TatD family hydrolase
coiled-coil (db=Coil db_id=coil from=70 to=91 evalue=NA)
TATD_3 (db=PatternScan db_id=PS01091 from=199 to=215 evalue=0.0 interpro_id=IPR018228 interpro_description=Deoxyribonuclease, TatD-related, conserved site GO=Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888))
ACD2_19_20
unknown

Not on your lists

comp(25594..26358)
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 RepID=D4TAG9_9XANT (db=UNIREF evalue=3.0e-09 bit_score=65.9 identity=25.81 coverage=81.1764705882353)
seg (db=Seg db_id=seg from=197 to=208)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=77 to=239 evalue=2.1e-11 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
Putative uncharacterized protein n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 RepID=D4TAG9_9XANT Tax=ACD2
Displaying 20 items

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