Alias: ACD49_35014.94907.23
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD49_12_1
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
1..177
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Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VY07_9CYAN (db=UNIREF evalue=4.0e-11 bit_score=70.1 identity=62.5 coverage=93.2203389830508)
Excinuclease ABC subunit C domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EKD66538.1}; Flags: Fragment;; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD49_12_2
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(258..458)
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seg (db=Seg db_id=seg from=21 to=30)
seg 21..30 Tax=ACD49
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ACD49_12_3
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
799..1230
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seg (db=Seg db_id=seg from=7 to=24)
seg (db=Seg db_id=seg from=64 to=75)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=27 evalue=6.0)
seg 64..75 Tax=ACD49
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ACD49_12_4
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
1230..2648
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DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQV1_SYNAS (db=UNIREF evalue=5.0e-100 bit_score=368.0 identity=45.18 coverage=91.5433403805497)
seg (db=Seg db_id=seg from=98 to=116)
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ACD49_12_5
unknown
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Not on your lists |
2723..3751
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rpoD; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EF6 (db=UNIREF evalue=1.0e-38 bit_score=164.0 identity=38.55 coverage=79.0087463556851)
seg (db=Seg db_id=seg from=78 to=96)
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=66 to=177 evalue=9.8e-27 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
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ACD49_12_6
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
3965..7900
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seg (db=Seg db_id=seg from=80 to=91)
seg (db=Seg db_id=seg from=15 to=28)
coiled-coil (db=Coil db_id=coil from=348 to=376 evalue=NA)
coiled-coil (db=Coil db_id=coil from=101 to=122 evalue=NA)
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ACD49_12_7
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
7963..9000
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rlmN2; ribosomal RNA large subunit methyltransferase N 2 (EC:2.1.1.- 2.1.1.192)
Predicted radical SAM enzyme, Cfr type (db=HMMPIR db_id=PIRSF006004 from=1 to=345 evalue=5.0e-110 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
TIGR00048: radical SAM enzyme, Cfr family (db=HMMTigr db_id=TIGR00048 from=1 to=345 evalue=1.0e-86 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
Radical_SAM (db=HMMPfam db_id=PF04055 from=105 to=271 evalue=1.8e-12 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
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ACD49_12_8
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
9075..10598
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seg (db=Seg db_id=seg from=296 to=314)
coiled-coil (db=Coil db_id=coil from=112 to=133 evalue=NA)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=415 to=484 evalue=5.2e-07 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
coiled-coil 112..133 Tax=ACD49
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ACD49_12_9
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
10955..14125
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isoleucyl-tRNA synthetase (EC:6.1.1.5)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucyl-tRNA synthetase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9H8_9BACT (db=UNIREF evalue=0.0 bit_score=881.0 identity=44.3 coverage=95.5534531693472)
seg (db=Seg db_id=seg from=1039 to=1052)
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ACD49_12_10
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(14126..15268)
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type II secretion system protein F
transmembrane_regions (db=TMHMM db_id=tmhmm from=346 to=368)
transmembrane_regions (db=TMHMM db_id=tmhmm from=193 to=215)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=167)
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ACD49_12_11
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(15289..16542)
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Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APV7_9BACE (db=UNIREF evalue=4.0e-92 bit_score=342.0 identity=44.25 coverage=93.0622009569378)
hypothetical protein
hypothetical protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=4 to=413 evalue=1.3e-81)
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ACD49_12_12
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(16530..17711)
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coiled-coil (db=Coil db_id=coil from=330 to=351 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
coiled-coil 330..351 Tax=ACD49
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ACD49_12_13
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(17713..18516)
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seg (db=Seg db_id=seg from=47 to=68)
seg (db=Seg db_id=seg from=251 to=263)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
seg 47..68 Tax=ACD49
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ACD49_12_14
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(18603..19184)
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hypothetical protein
seg (db=Seg db_id=seg from=164 to=175)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=9 to=145 evalue=2.7e-13)
Radical_SAM (db=HMMPfam db_id=PF04055 from=26 to=143 evalue=6.2e-10 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
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ACD49_12_15
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(19347..19523)
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seg (db=Seg db_id=seg from=13 to=33)
seg 13..33 Tax=ACD49
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ACD49_12_16
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(19542..19718)
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hypothetical protein
hypothetical protein alias=ACD49_C00012G00016,ACD49_35014.94907.23G0016,ACD49_35014.94907.23_16 id=69398 tax=ACD49 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKD66468.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD49_12_17
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(19770..21974)
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hypothetical protein
hypothetical protein
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Rhodobacter capsulatus SB 1003 RepID=D5AS44_RHOCB (db=UNIREF evalue=0.0 bit_score=804.0 identity=55.22 coverage=88.4353741496599)
seg (db=Seg db_id=seg from=94 to=105)
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ACD49_12_18
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(22227..22784)
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DNA-3-methyladenine glycosylase
Pur_DNA_glyco (db=HMMPfam db_id=PF02245 from=5 to=185 evalue=4.2e-52 interpro_id=IPR003180 interpro_description=Methylpurine-DNA glycosylase (MPG) GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: alkylbase DNA N-glycosylase activity (GO:0003905), Biological Process: base-excision repair (GO:0006284))
FMT C-terminal domain-like (db=superfamily db_id=SSF50486 from=1 to=185 evalue=2.1e-45 interpro_id=IPR011034 interpro_description=Formyl transferase, C-terminal-like GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=Gene3D db_id=G3DSA:3.10.300.10 from=3 to=185 evalue=2.1e-45 interpro_id=IPR003180 interpro_description=Methylpurine-DNA glycosylase (MPG) GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: alkylbase DNA N-glycosylase activity (GO:0003905), Biological Process: base-excision repair (GO:0006284))
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ACD49_12_19
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
22908..24374
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hypothetical protein
seg (db=Seg db_id=seg from=135 to=143)
seg (db=Seg db_id=seg from=297 to=307)
seg (db=Seg db_id=seg from=227 to=244)
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ACD49_12_20
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
24445..25128
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24445..25128 + (rbs_motif=TTTTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
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ACD49_12_21
unknown
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Not on your lists |
25314..25898
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engB; ribosome biogenesis GTP-binding protein YsxC
Probable GTP-binding protein engB n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URN8_9AQUI (db=UNIREF evalue=1.0e-20 bit_score=102.0 identity=35.71 coverage=84.6153846153846)
GTP-BINDING PROTEIN ENGB-RELATED (db=HMMPanther db_id=PTHR11649:SF13 from=24 to=192 evalue=2.4e-30)
MSS1/TRME-RELATED GTP-BINDING PROTEIN (db=HMMPanther db_id=PTHR11649 from=24 to=192 evalue=2.4e-30)
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ACD49_12_22
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
25905..27062
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hypothetical protein
seg (db=Seg db_id=seg from=265 to=276)
alr: alanine racemase (db=HMMTigr db_id=TIGR00492 from=19 to=385 evalue=4.6e-44 interpro_id=IPR000821 interpro_description=Alanine racemase GO=Biological Process: alanine metabolic process (GO:0006522), Molecular Function: alanine racemase activity (GO:0008784))
PLP-binding barrel (db=superfamily db_id=SSF51419 from=26 to=259 evalue=5.6e-38)
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ACD49_12_23
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
comp(27237..27662)
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27237..27662 - (rbs_motif=TTTTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
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ACD49_12_24
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
27790..28461
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27790..28461 + (rbs_motif=TTTTA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
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ACD49_12_25
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
28752..29300
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50S ribosomal protein L3
seg (db=Seg db_id=seg from=125 to=137)
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=181 evalue=1.5e-30 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=181 evalue=1.3e-29)
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ACD49_12_26
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
29315..29935
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50S ribosomal protein L4/L1e
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=205 evalue=4.6e-57 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746 from=18 to=205 evalue=2.5e-52 interpro_id=IPR013005 interpro_description=Ribosomal protein L4/L1e, bacterial-type)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=18 to=205 evalue=2.5e-52 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
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ACD49_12_27
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
29950..30243
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Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=94 evalue=5.8e-16 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=4 to=93 evalue=1.9e-15 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=96 evalue=4.4e-13 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD49_12_28
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
30264..31112
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ribosomal protein L2, bacterial/organellar
seg (db=Seg db_id=seg from=153 to=164)
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=3 to=277 evalue=2.0e-120 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=3 to=276 evalue=3.4e-92 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD49_12_29
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
31176..31439
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30S ribosomal protein S19 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNJ7_9FIRM (db=UNIREF evalue=1.0e-26 bit_score=121.0 identity=59.77 coverage=97.7272727272727)
30S ribosomal protein S19
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=87 evalue=2.3e-41 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=83 evalue=2.4e-35 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD49_12_30
ACD49, Gracilibacteria, Bacteria
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Not on your lists |
31498..31824
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LSU ribosomal protein L22P
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=3 to=106 evalue=6.6e-26 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=1 to=108 evalue=3.9e-23 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.90.470.10 from=2 to=107 evalue=1.0e-21 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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