ggKbase home page

ar4r2_scaffold_116

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_116_1
Methanobrevibacter smithii, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6..1139)
DNA (1134bp) protein (378aa)
ATPase n=1 Tax=Methanobrevibacter smithii RepID=UPI00036B3981
ATPase
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:ABQ86266.1}; TaxID=420247 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861).;"
ar4r2_scaffold_116_2

Not on your lists

comp(1251..2069)
DNA (819bp) protein (273aa)
seg 11..31 id=124231 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKD29483.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
general secretion pathway protein G
ar4r2_scaffold_116_3
RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

2240..2638
DNA (399bp) protein (133aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Beggiatoa sp. PS RepID=A7BRJ0_9GAMM
6,7-dimethyl-8-ribityllumazine synthase
Tax=RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated
ar4r2_scaffold_116_4
CG_GN02-01, Gracilibacteria, Bacteria

Not on your lists

2733..3413
DNA (681bp) protein (227aa)
oxidoreductase FAD/NAD(P)-binding subunit; K05784 benzoate 1,2-dioxygenase electron transfer component id=69467 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
oxidoreductase FAD/NAD(P)-binding protein
Tax=CG_GN02-01
ar4r2_scaffold_116_5
CG_GN02-01, Gracilibacteria, Bacteria

Not on your lists

3816..5252
DNA (1437bp) protein (479aa)
pmx:PERMA_0555 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] id=68907 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-) rbh
Tax=CG_GN02-01
ar4r2_scaffold_116_6
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists


5399..5668
DNA (270bp) protein (90aa)
SSU ribosomal protein S15P; K02956 small subunit ribosomal protein S15 id=124319 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
30S ribosomal protein S15
Tax=CG_GN02-02
ar4r2_scaffold_116_7

Not on your lists

5786..8014
DNA (2229bp) protein (743aa)
(p)ppgpp synthetase i, spot/rela (EC:2.7.6.5) rbh
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2FVY7_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE26032.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_116_8
unknown

Not on your lists

comp(8038..10920)
DNA (2883bp) protein (961aa)

This feature has no annotations

ar4r2_scaffold_116_9
ACD2, Gracilibacteria, Bacteria

Not on your lists

11088..13424
DNA (2337bp) protein (779aa)
Tax=ACD2
ar4r2_scaffold_116_10

Not on your lists

13442..13960
DNA (519bp) protein (173aa)
DNA-damage-inducible protein D n=1 Tax=uncultured bacterium (gcode 4) RepID=K2AXL0_9BACT
DNA-damage-inducible protein D {ECO:0000313|EMBL:EKD66511.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
DNA-damage-inducible protein D
ar4r2_scaffold_116_11
CG_Pacebac_02, Pacebacteria, Microgenomates, Bacteria

Not on your lists

14090..15034
DNA (945bp) protein (315aa)
Glycosyl transferase family 2 id=4798906 bin=GWC2_TM7_48_9 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good rbh
Glycosyl transferase, family 2
Tax=CG_Pacebac_02
ar4r2_scaffold_116_12
R_OP11_Daviesbacteria_38_18, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(15059..15907)
DNA (849bp) protein (283aa)
Tax=RIFCSPLOWO2_02_FULL_OP11_Daviesbacteria_38_18_curated
ar4r2_scaffold_116_13
GWA2_OP11_44_7, Microgenomates, Bacteria

Not on your lists

comp(15885..16493)
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT76004.1}; TaxID=1618500 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_44_7.;"
ar4r2_scaffold_116_14
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(16481..17074)
DNA (594bp) protein (198aa)
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8)
phosphatidylserine synthase n=1 Tax=Bacillus sp. 10403023 RepID=UPI000288D028
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
ar4r2_scaffold_116_15
RHI_OP11_Curtissbacteria_41_17, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

comp(17076..18167)
DNA (1092bp) protein (364aa)
Putative Fe-S oxidoreductase id=4303988 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_Curtissbacteria_41_17_curated
ar4r2_scaffold_116_16
Gramella forsetii, Gramella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18171..18980)
DNA (810bp) protein (270aa)
putative oxidoreductase (EC:1.-.-.-)
Short-chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CAL67224.1}; EC=1.-.-.- {ECO:0000313|EMBL:CAL67224.1};; TaxID=411154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gramella.;" source="Gramella forsetii (strain KT0803).;"
Short-chain dehydrogenase/reductase family protein n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M3M9_GRAFK
ar4r2_scaffold_116_17
GWA2_OP11_44_7, Microgenomates, Bacteria

Not on your lists

comp(18958..19818)
DNA (861bp) protein (287aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT75996.1}; TaxID=1618500 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_44_7.;"
ar4r2_scaffold_116_18
unknown

Not on your lists

comp(19846..20052)
DNA (207bp) protein (69aa)

This feature has no annotations

ar4r2_scaffold_116_19
unknown

Not on your lists

comp(20054..20293)
DNA (240bp) protein (80aa)

This feature has no annotations

ar4r2_scaffold_116_20
unknown

Not on your lists

comp(20310..20528)
DNA (219bp) protein (73aa)

This feature has no annotations

ar4r2_scaffold_116_21
unknown

Not on your lists

comp(20542..21543)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0002DDC2F8
ar4r2_scaffold_116_22
Parcubacteria bacterium GW2011_GWA1_38_7, Parcubacteria, Bacteria

Not on your lists

comp(21553..22680)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Spirulina subsalsa RepID=UPI0002FEA458
Fe-S oxidoreductase {ECO:0000313|EMBL:KKQ77380.1}; TaxID=1618783 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_38_7.;"
radical SAM protein superfamily with also 4Fe-4S single cluster domain
MoaA/NifB/PqqE/SkfB family Jill Banfield (4/16/19)
ar4r2_scaffold_116_23
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

Not on your lists

comp(22662..23726)
DNA (1065bp) protein (355aa)
Putative integral membrane protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU53_9FIRM
putative membrane associated phosphatidyltransferase
Tax=RBG_13_Spirochaetes_51_14_curated
ar4r2_scaffold_116_24
unknown

Not on your lists

comp(23727..24626)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI0003705E51
ar4r2_scaffold_116_25
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24611..26539)
DNA (1929bp) protein (643aa)
PEP-utilizing enzyme, mobile domain protein n=1 Tax=Lachnoanaerobaculum saburreum F0468 RepID=I0R765_9FIRM
PEP-utilizing enzyme, mobile domain protein {ECO:0000313|EMBL:EIC95523.1}; TaxID=1095750 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum F0468.;"
pyruvate, water dikinase
ar4r2_scaffold_116_26
RIFOXYB2_FULL_Peregrinibacteria_32_7_curated, Peregrinibacteria, Bacteria

Not on your lists

26706..27734
DNA (1029bp) protein (343aa)
hypothetical protein, partial n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000372FF95 rbh
hypothetical protein rbh
Tax=RIFOXYB2_FULL_Peregrinibacteria_32_7_curated
ar4r2_scaffold_116_27
unknown

Not on your lists

27835..28827
DNA (993bp) protein (331aa)

This feature has no annotations

ar4r2_scaffold_116_28
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28928..29329
DNA (402bp) protein (134aa)
Prophage antirepressor n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VXQ7_DESAS
prophage antirepressor
Prophage antirepressor {ECO:0000313|EMBL:ACV62713.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
ar4r2_scaffold_116_29
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

29427..30770
DNA (1344bp) protein (448aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] id=5098268 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria) rbh
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KKP37921.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
putative UDP-glucose dehydrogenase
ar4r2_scaffold_116_30
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

30789..32477
DNA (1689bp) protein (563aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
2-isopropylmalate synthase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG82_RHOM4
2-isopropylmalate synthase
Displaying items 1-30 of 72 in total

View Taxonomy