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ar4r2_scaffold_2088

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2088_1
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..347)
DNA (345bp) protein (115aa)
Transposase IS66 n=1 Tax=Clostridium sp. DL-VIII RepID=G7MA26_9CLOT
Transposase IS66 {ECO:0000313|EMBL:EHJ01792.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ar4r2_scaffold_2088_2
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(590..985)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NXA0_9SPHI
Phage envelope protein {ECO:0000313|EMBL:KIX20072.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
Phage envelope protein-like protein
ar4r2_scaffold_2088_3
R_RIF_OD1_06_38_12b, RIF-OD1-6, Parcubacteria, Bacteria

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comp(1121..1522)
DNA (402bp) protein (134aa)
Possible mRNA interferase MazF
UPI0003D0546D related cluster n=1 Tax=unknown RepID=UPI0003D0546D
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_38_12b_curated
mRNA interferase MazF [EC:3.1.-.-] Jill Banfield (11/10/16)
ar4r2_scaffold_2088_4

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comp(1588..1866)
DNA (279bp) protein (93aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein id=49826 bin=ACD3 species=ACD3 genus=ACD3 taxon_order=ACD3 taxon_class=ACD3 phylum=BD1-5 tax=ACD3 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
cas2; CRISPR-associated endoribonuclease Cas2
ar4r2_scaffold_2088_5

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comp(1990..2949)
DNA (960bp) protein (320aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
cas1; CRISPR-associated endonuclease Cas1 1 (EC:3.1.-.-)
CRISPR-associated endonuclease Cas1 n=1 Tax=uncultured bacterium (gcode 4) RepID=K2G2G6_9BACT
ar4r2_scaffold_2088_6

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comp(2960..3577)
DNA (618bp) protein (206aa)
Possible: CRISPR-associated exonuclease Cas4
hypothetical protein; K07464 putative RecB family exonuclease id=49808 bin=ACD3 species=ACD3 genus=ACD3 taxon_order=ACD3 taxon_class=ACD3 phylum=BD1-5 tax=ACD3 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKE28448.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
Possible: CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] (HMM) Jill Banfield (11/10/16)
ar4r2_scaffold_2088_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(3644..3985)
DNA (342bp) protein (114aa)
MazF family transcriptional regulator; K07171 mRNA interferase [EC:3.1.-.-] id=5095001 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
transcriptional modulator of MazE/toxin MazF
Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
mRNA interferase MazF [EC:3.1.-.-] HMM Jill Banfield (11/10/16)
ar4r2_scaffold_2088_8
unknown

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comp(3996..4253)
DNA (258bp) protein (86aa)

This feature has no annotations

ar4r2_scaffold_2088_9

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comp(4323..7991)
DNA (3669bp) protein (1223aa)
CRISPR-Cas Cpf1
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GDV2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE28449.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein rbh
ar4r2_scaffold_2088_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8111..8881)
DNA (771bp) protein (257aa)
Uncharacterized protein id=1780564 bin=GWA2_Bacteroidetes_33_15 species=Flavobacterium columnare genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_33_15 organism_group=Bacteroidetes
Uncharacterized protein {ECO:0000313|EMBL:EKS38570.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ar4r2_scaffold_2088_11
CG_GN02-01, Gracilibacteria, Bacteria

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9012..9563
DNA (552bp) protein (184aa)
NAD(P)H dehydrogenase, quinone family (EC:1.6.5.2)
NADPH dehydrogenase n=1 Tax=uncultured bacterium RepID=K2FQE9_9BACT
Tax=CG_GN02-01
ar4r2_scaffold_2088_12
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9630..10076
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C4J9_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL64156.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
activator of Hsp90 ATPase 1 family protein
ar4r2_scaffold_2088_13
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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10094..11035
DNA (942bp) protein (314aa)
transcriptional regulator n=1 Tax=Vibrio harveyi RepID=UPI000347CCFC
GyrI-like small molecule binding domain protein {ECO:0000313|EMBL:EQM41274.1}; TaxID=1238224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus VPCR-2010.;"
hypothetical protein
ar4r2_scaffold_2088_14
GWF2_OD1_35_39, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

11042..11530
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:914 RepID=R7M3G0_9CLOT
Toxin-antitoxin system, toxin component, Fic family {ECO:0000313|EMBL:KKP78422.1}; TaxID=1618721 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF2_35_39.;"
virulence protein-like protein
ar4r2_scaffold_2088_15
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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11545..12105
DNA (561bp) protein (187aa)
Arylesterase {ECO:0000313|EMBL:EPR68846.1}; EC=3.1.1.2 {ECO:0000313|EMBL:EPR68846.1};; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
Arylesterase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VFQ7_9BACT
G-D-S-L family lipolytic protein
acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5] Jill Banfield (11/10/16)
ar4r2_scaffold_2088_16

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comp(11983..12441)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q528_9BACT
Marine sediment metagenome DNA, contig: S12H4_L03649 {ECO:0000313|EMBL:GAI82796.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase
Displaying 16 items

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