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08E140C01_10kDa_scaffold_1233

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_10kDa_scaffold_1233_1
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1080)
DNA (1080bp) protein (360aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP86784.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendoc
08E140C01_10kDa_scaffold_1233_2
Pseudomonas rhizosphaerae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1346..3079)
DNA (1734bp) protein (578aa)
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Pseudomonas sp. GM18 RepID=J3ETY2_9PSED rbh
DNA helicase II rbh
DNA helicase II {ECO:0000313|EMBL:AIS16157.1}; TaxID=216142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas rhizosphaerae.
08E140C01_10kDa_scaffold_1233_3
Pseudomonas rhizosphaerae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3076..5160)
DNA (2085bp) protein (695aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM18 RepID=J2NN29_9PSED rbh
ATP-dependent OLD family endonuclease {ECO:0000313|EMBL:AIS16158.1}; TaxID=216142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseu
ATP-dependent OLD family endonuclease rbh
08E140C01_10kDa_scaffold_1233_4
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5409..6023)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina DLHK RepID=J7TWI8_PSEME
NERD domain-containing protein
NERD domain protein {ECO:0000313|EMBL:ABP86780.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina
08E140C01_10kDa_scaffold_1233_5
GWC2_Pseudomonadales_63_15_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6284..6970)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI00037742D2
hypothetical protein Tax=GWC2_Pseudomonadales_63_15_curated
hypothetical protein
08E140C01_10kDa_scaffold_1233_6
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6971..7675)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI0003619D3B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFJ92368.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-
hypothetical protein
08E140C01_10kDa_scaffold_1233_7
GWC2_Pseudomonadales_63_15_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7672..8316)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI000366A87F rbh
hypothetical protein Tax=GWC2_Pseudomonadales_63_15_curated
hypothetical protein
08E140C01_10kDa_scaffold_1233_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8558..9724)
DNA (1167bp) protein (389aa)
Cell division protein Fic n=4 Tax=Pseudomonas aeruginosa RepID=T5L4G1_PSEAI rbh
hypothetical protein
Cell division protein Fic {ECO:0000313|EMBL:AHB53834.1}; TaxID=1415629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aer
08E140C01_10kDa_scaffold_1233_9
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9814..10707)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2ITW3_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:ENA27021.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. H
methionine aminopeptidase
08E140C01_10kDa_scaffold_1233_trna_1
unknown

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comp(10881..10954)
DNA (74bp)
transferRNA
08E140C01_10kDa_scaffold_1233_10
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10971..14705)
DNA (3735bp) protein (1245aa)
diguanylate cyclase n=1 Tax=Pseudomonas alcaliphila RepID=UPI0003079148 rbh
Diguanylate cyclase {ECO:0000313|EMBL:KJU79783.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcali
diguanylate cyclase/phosphodiesterase rbh
08E140C01_10kDa_scaffold_1233_11
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14862..15467)
DNA (606bp) protein (202aa)
RNA polymerase sigma factor RpoD n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SY74_PSEME
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Ps
08E140C01_10kDa_scaffold_1233_12
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

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15535..16521
DNA (987bp) protein (329aa)
RNA polymerase sigma factor (Fragment) n=1 Tax=uncultured Pseudomonas sp. RepID=U6E4L6_9PSED
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
hypothetical protein
08E140C01_10kDa_scaffold_1233_13
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16700..18697)
DNA (1998bp) protein (666aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1390370 species="Bacteria; Proteobacte
dnaG; DNA primase (EC:2.7.7.-) rbh
DNA primase n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1U856_PSEME rbh
08E140C01_10kDa_scaffold_1233_14
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18843..19058)
DNA (216bp) protein (72aa)
30S ribosomal protein S21 n=13 Tax=Pseudomonas RepID=RS21_PSEMY
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseu
08E140C01_10kDa_scaffold_1233_15
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19262..20287
DNA (1026bp) protein (342aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
gcp; O-sialoglycoprotein endopeptidase (EC:3.4.24.57) rbh
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SZE5_PSEME rbh
08E140C01_10kDa_scaffold_1233_16
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20344..20913)
DNA (570bp) protein (190aa)
Glycerol-3-phosphate acyltransferase n=2 Tax=Pseudomonas mendocina RepID=A4XZK5_PSEMY rbh
putative glycerol-3-phosphate acyltransferase PlsY rbh
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
08E140C01_10kDa_scaffold_1233_17
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20989..21345
DNA (357bp) protein (119aa)
folB; dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase {ECO:0000313|EMBL:CDR92948.1}; EC=4.1.2.25 {ECO:0000313|EMBL:CDR92948.1};; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae
FolB protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7J2G5_PSEPS
08E140C01_10kDa_scaffold_1233_18
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21336..21818
DNA (483bp) protein (161aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Pseudomonas mendocina DLHK RepID=J7TWH8_PSEME
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:KFJ92355.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadacea
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
08E140C01_10kDa_scaffold_1233_19
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22018..22266)
DNA (249bp) protein (83aa)
cca; tRNA nucleotidyltransferase (CCA-adding enzyme) (EC:2.7.7.72)
Multifunctional CCA protein n=1 Tax=Pseudomonas mendocina DLHK RepID=J7TIA0_PSEME
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; P
08E140C01_10kDa_scaffold_1233_20
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22464..22712)
DNA (249bp) protein (83aa)
Multifunctional CCA protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DM90_PSEMN
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; P
multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
08E140C01_10kDa_scaffold_1233_21
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22878..24443)
DNA (1566bp) protein (522aa)
SpoVR family protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002FB8A45 rbh
SpoVR family protein {ECO:0000313|EMBL:KJU79768.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcal
SpoVR family protein rbh
08E140C01_10kDa_scaffold_1233_22
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24454..25245)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002FBDEE7
UPF0229 protein JF55_06315 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
hypothetical protein
08E140C01_10kDa_scaffold_1233_23
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25745..26890)
DNA (1146bp) protein (382aa)
PrkA family serine protein kinase n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002D7F371
putative serine protein kinase PrkA
Serine/threonine protein kinase {ECO:0000313|EMBL:KJU79766.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/
08E140C01_10kDa_scaffold_1233_24
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26832..27593)
DNA (762bp) protein (254aa)
PrkA family serine protein kinase n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SY84_PSEME
PrkA family serine protein kinase {ECO:0000313|EMBL:ERH51226.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudom
prkA; putative serine protein kinase, PrkA
08E140C01_10kDa_scaffold_1233_25
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27878..28207)
DNA (330bp) protein (110aa)
Thiosulfate sulfurtransferase GlpE {ECO:0000256|HAMAP-Rule:MF_01009, ECO:0000256|SAAS:SAAS00010956}; EC=2.8.1.1 {ECO:0000256|HAMAP-Rule:MF_01009, ECO:0000256|SAAS:SAAS00010962};; TaxID=1390370 species
glpE; thiosulfate sulfurtransferase (EC:2.8.1.1)
Thiosulfate sulfurtransferase GlpE n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1U866_PSEME
08E140C01_10kDa_scaffold_1233_26
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28249..29067)
DNA (819bp) protein (273aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088330};; Ap4A hy
apaH3; diadenosine tetraphosphatase (EC:3.6.1.41) rbh
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1U4I9_PSEME rbh
08E140C01_10kDa_scaffold_1233_27
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29067..29447)
DNA (381bp) protein (127aa)
Protein ApaG n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7IFC7_PSEPS
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pse
apaG; Protein apaG
08E140C01_10kDa_scaffold_1233_28
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(29477..29812)
DNA (336bp) protein (112aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SHF4_PSEME
dimethyladenosine transferase
08E140C01_10kDa_scaffold_1233_29
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29832..30137)
DNA (306bp) protein (102aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Pseudomonas mendocina DLHK RepID=J7SLT8_PSEME
Suspect SCG annotation. See neighboring gene [08E140C01_10kDa_scaffold_1233_28].
Displaying items 1-30 of 50 in total

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