ggKbase home page

bjp_ig2069_scaffold_326_curated

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2069_scaffold_326_curated_1
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(332..880)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Smithella sp. ME-1 RepID=V4FID0_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:ESP62919.1}; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
response regulator receiver
bjp_ig2069_scaffold_326_curated_2
unknown

Not on your lists

comp(898..2112)
DNA (1215bp) protein (405aa)
integral membrane sensor signal transduction histidine kinase; K07710 two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3]
Histidine kinase id=3368546 bin=GWF2_Lentisphaerae_49_21 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
bjp_ig2069_scaffold_326_curated_3
unknown

Not on your lists

2359..3108
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein SYNAS_07390 id=3647210 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein rbh
bjp_ig2069_scaffold_326_curated_4
unknown

Not on your lists

3191..3670
DNA (480bp) protein (160aa)
crossover junction endodeoxyribonuclease (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC id=4935440 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_326_curated_5
unknown

Not on your lists

3670..4278
DNA (609bp) protein (203aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA id=4935441 bin=GWC2_Syntrophus__56_31 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_326_curated_6
unknown

Not on your lists

4302..5330
DNA (1029bp) protein (343aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] rbh
Holliday junction ATP-dependent DNA helicase RuvB id=4776148 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_326_curated_7
unknown

Not on your lists

5355..5885
DNA (531bp) protein (177aa)
Putative uncharacterized protein id=4776149 bin=GWC2_Syntrophobacterales_56_13 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
cytoplasmic protein; K09765 hypothetical protein
bjp_ig2069_scaffold_326_curated_8
unknown

Not on your lists

6196..7125
DNA (930bp) protein (310aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] rbh
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=4776150 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_326_curated_9
unknown

Not on your lists

7327..7908
DNA (582bp) protein (194aa)
Putative uncharacterized protein id=4935474 bin=GWC2_Syntrophus__56_31 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
bjp_ig2069_scaffold_326_curated_10
unknown

Not on your lists

7960..10176
DNA (2217bp) protein (739aa)
signal transduction histidine kinase involved in nitrogen metabolism regulation; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] rbh
Signal transduction histidine kinase involved in nitrogen metabolism regulation id=4776152 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_326_curated_11
unknown

Not on your lists

10196..10312
DNA (117bp) protein (39aa)

This feature has no annotations

bjp_ig2069_scaffold_326_curated_12
unknown

Not on your lists

10338..11708
DNA (1371bp) protein (457aa)
Response regulator containing sigma 54 interaction domain id=4776153 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
response regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX rbh
bjp_ig2069_scaffold_326_curated_13
unknown

Not on your lists

comp(11714..12691)
DNA (978bp) protein (326aa)
Putative uncharacterized protein id=4776154 bin=GWC2_Syntrophobacterales_56_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein; K07027
bjp_ig2069_scaffold_326_curated_14

Not on your lists

comp(12723..13130)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YAS0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD22314.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
bjp_ig2069_scaffold_326_curated_15
unknown

Not on your lists

comp(13225..14289)
DNA (1065bp) protein (355aa)
Chaperone protein DnaJ id=4037268 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
molecular chaperone DnaJ; K03686 molecular chaperone DnaJ rbh
bjp_ig2069_scaffold_326_curated_16
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14286..14684)
DNA (399bp) protein (133aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU37_SYNAS
cytoplasmic protein
Hypothetical cytosolic protein {ECO:0000313|EMBL:ABC77596.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
bjp_ig2069_scaffold_326_curated_17
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14793..15674)
DNA (882bp) protein (294aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] rbh
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRW7_SYNAS rbh
bjp_ig2069_scaffold_326_curated_18
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15690..16319)
DNA (630bp) protein (210aa)
hydroxyacylglutathione hydrolase W (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6] rbh
Hydroxyacylglutathione hydrolase W {ECO:0000313|EMBL:ABC76830.1}; EC=3.1.2.6 {ECO:0000313|EMBL:ABC76830.1};; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
Hydroxyacylglutathione hydrolase W n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRW6_SYNAS rbh
bjp_ig2069_scaffold_326_curated_19
unknown

Not on your lists

comp(16543..17886)
DNA (1344bp) protein (448aa)
16S rRNA m(5)C 967 methyltransferase (EC:2.1.1.-); K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] rbh
16S rRNA m(5)C 967 methyltransferase id=3904934 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_326_curated_20
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17883..18485)
DNA (603bp) protein (201aa)
Acyltransferase family protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VLJ7_9GAMM
acyltransferase
Acyltransferase family protein {ECO:0000313|EMBL:CBL45689.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
bjp_ig2069_scaffold_326_curated_21
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18520..19458)
DNA (939bp) protein (313aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] rbh
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
Methionyl-tRNA formyltransferase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=FMT_SYNAS rbh
bjp_ig2069_scaffold_326_curated_22
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

19945..20298
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YRN6_9CHLB
Uncharacterized protein {ECO:0000313|EMBL:EAT58976.1}; Flags: Precursor;; TaxID=377431 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium ferrooxidans DSM 13031.;"
hypothetical protein
bjp_ig2069_scaffold_326_curated_23
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20329..20979
DNA (651bp) protein (217aa)
Methyltransferase type 12 n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8VZ73_DESAS rbh
type 12 methyltransferase rbh
Methyltransferase type 12 {ECO:0000313|EMBL:ACV62983.1}; TaxID=485916 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
bjp_ig2069_scaffold_326_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21050..21658
DNA (609bp) protein (203aa)
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin n=2 Tax=Alicycliphilus denitrificans RepID=E8TZJ6_ALIDB
peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin {ECO:0000313|EMBL:AEB83150.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
bjp_ig2069_scaffold_326_curated_25
Marinobacter sp. ES-1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21803..22585
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase n=1 Tax=Marinobacter sp. ES-1 RepID=U7GEP1_9ALTE rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:ERP95942.1}; TaxID=1396858 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ES-1.;"
enoyl-CoA hydratase/isomerase family protein carnitinyl-CoA rbh
bjp_ig2069_scaffold_326_curated_26
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22634..22837
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Smithella sp. ME-1 RepID=V4F9K6_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP63045.1}; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
hypothetical protein
bjp_ig2069_scaffold_326_curated_27

Not on your lists

22947..23651
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XVR4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD34600.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein
bjp_ig2069_scaffold_326_curated_28

Not on your lists

23653..24495
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z9Q4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD34599.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
bjp_ig2069_scaffold_326_curated_29
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24684..25595
DNA (912bp) protein (304aa)
D-alanyl-D-alanine carboxypeptidase; K07262 D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM35_AZOSU
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AEV24551.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
bjp_ig2069_scaffold_326_curated_30
unknown

Not on your lists

25754..26023
DNA (270bp) protein (90aa)
DNA-binding protein HU-beta id=4204487 bin=GWC2_Syntrophus__56_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
nucleoid protein HU beta subunit; K03530 DNA-binding protein HU-beta
Displaying items 1-30 of 74 in total

View Taxonomy