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bjp_ig2103_scaffold_95_curated

Search features with annotation key words

Displaying items 1-30 of 152 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2103_scaffold_95_curated_1
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3..527
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP8_DECAR
hypothetical protein; K12063 conjugal transfer ATP-binding protein TraC
Uncharacterized protein {ECO:0000313|EMBL:AAZ47383.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_2
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

524..892
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP7_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ47384.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_3
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

889..1485
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP6_DECAR rbh
hypothetical protein; K12062 conjugal transfer pilin signal peptidase TrbI rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ47385.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_4
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1496..1894
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP5_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ47386.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_5
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1891..2526
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP4_DECAR rbh
hypothetical protein; K12061 conjugal transfer pilus assembly protein TraW rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ47387.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_6
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2523..3551
DNA (1029bp) protein (343aa)
TraU n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DM0_DECAR rbh
hypothetical protein; K12060 conjugal transfer pilus assembly protein TraU rbh
TraU {ECO:0000313|EMBL:AAZ47061.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_7
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3538..4296
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP2_DECAR rbh
hypothetical protein; K12059 conjugal transfer pilus assembly protein TrbC rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ47389.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_8
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4306..6426
DNA (2121bp) protein (707aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP1_DECAR rbh
conjugal transfer mating pair stabilization protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ47390.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_9
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6423..6797
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CP0_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ47391.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_10
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6805..7665
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DL6_DECAR rbh
hypothetical protein; K12057 conjugal transfer pilus assembly protein TraF rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ47065.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_11
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7662..9110
DNA (1449bp) protein (483aa)
TraH n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DL5_DECAR rbh
hypothetical protein; K12072 conjugative transfer pilus assembly protein TraH rbh
TraH {ECO:0000313|EMBL:AAZ47066.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_12
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9144..11918
DNA (2775bp) protein (925aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CN7_DECAR rbh
hypothetical protein; K12056 conjugal transfer mating pair stabilization protein TraG rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ47394.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_13
unknown

Not on your lists

12767..13582
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Pseudomonas syringae pv. morsprunorum str. M302280 RepID=F3E4C3_9PSED
bjp_ig2103_scaffold_95_curated_14
unknown

Not on your lists

comp(13763..14194)
DNA (432bp) protein (144aa)

This feature has no annotations

bjp_ig2103_scaffold_95_curated_15
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14381..15067)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G741_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL62328.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
bjp_ig2103_scaffold_95_curated_16
unknown

Not on your lists

15833..16996
DNA (1164bp) protein (388aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=U8PY89_PSEAI rbh
hypothetical protein rbh
bjp_ig2103_scaffold_95_curated_17
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16993..18612
DNA (1620bp) protein (540aa)
thiamine biosynthesis protein ThiF n=1 Tax=Dyella ginsengisoli RepID=UPI00034D019E rbh
ThiF domain protein {ECO:0000313|EMBL:KCB34694.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
UBA/THIF-type NAD/FAD-binding protein rbh
bjp_ig2103_scaffold_95_curated_18
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18600..19070
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4PY92_PSECO
Uncharacterized protein {ECO:0000313|EMBL:ESR01156.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
hypothetical protein
bjp_ig2103_scaffold_95_curated_19
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19250..20659)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XBA5_METSD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACT51875.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
bjp_ig2103_scaffold_95_curated_20
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20664..21659)
DNA (996bp) protein (332aa)
Patatin n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XBA4_METSD rbh
patatin rbh
Patatin {ECO:0000313|EMBL:ACT51874.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
bjp_ig2103_scaffold_95_curated_trna_11
unknown

Not on your lists

comp(22207..22280)
DNA (74bp)
transferRNA
bjp_ig2103_scaffold_95_curated_21
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22314..22691)
DNA (378bp) protein (126aa)
Regulatory protein, MerR n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47CN1_DECAR
regulatory protein, MerR
Regulatory protein, MerR {ECO:0000313|EMBL:AAZ47400.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_22
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22675..22977)
DNA (303bp) protein (101aa)
Integration host factor subunit alpha 2 n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=IHFA2_DECAR
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
Integration host factor subunit alpha 2 {ECO:0000255|HAMAP-Rule:MF_00380}; Short=IHF-alpha 2 {ECO:0000255|HAMAP-Rule:MF_00380};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_23
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22992..25376)
DNA (2385bp) protein (795aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00283};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283}; Short=PheRS {ECO:0000255|HAMAP-Rule:MF_00283};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=SYFB_DECAR rbh
bjp_ig2103_scaffold_95_curated_24
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(25373..26419)
DNA (1047bp) protein (349aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] rbh
Phenylalanine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00281};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; Short=PheRS {ECO:0000255|HAMAP-Rule:MF_00281};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=SYFA_DECAR rbh
bjp_ig2103_scaffold_95_curated_25
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26515..26874)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=RL20_DECAR
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_95_curated_26

Not on your lists


comp(26886..27083)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=uncultured bacterium RepID=K2EDP3_9BACT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
bjp_ig2103_scaffold_95_curated_27

Not on your lists

comp(27230..27772)
DNA (543bp) protein (181aa)
Translation initiation factor IF-3 n=1 Tax=uncultured bacterium RepID=K2G0C6_9BACT
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
bjp_ig2103_scaffold_95_curated_28
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27776..29692)
DNA (1917bp) protein (639aa)
threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] rbh
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Threonine--tRNA ligase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=SYT_DECAR rbh
bjp_ig2103_scaffold_95_curated_trna_10
unknown

Not on your lists

comp(29827..29900)
DNA (74bp)
transferRNA
Displaying items 1-30 of 152 in total

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