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RifSed_csp1_16ft_2_scaffold_11542

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_2_scaffold_11542_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2..355)
DNA (354bp) protein (118aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpoA1; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)
DNA-directed RNA polymerase Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TRB7_METAC
RifSed_csp1_16ft_2_scaffold_11542_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(365..598)
DNA (234bp) protein (78aa)
DNA-directed RNA polymerase Tax=Methanolobus psychrophilus R15 RepID=K4MM15_9EURY
DNA-directed RNA polymerase, subunit B'
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_16ft_2_scaffold_11542_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(573..2069)
DNA (1497bp) protein (499aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpoB2; DNA-directed RNA polymerase, subunit B2 (EC:2.7.7.6)
DNA-directed RNA polymerase Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8H0_UNCMA
RifSed_csp1_16ft_2_scaffold_11542_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2062..3654)
DNA (1593bp) protein (531aa)
DNA-directed RNA polymerase, beta subunit {ECO:0000313|EMBL:KCZ72732.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KCZ72732.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA-directed RNA polymerase, beta subunit/140 kD subunit Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1D9_METHD
DNA-directed RNA polymerase, beta subunit/140 kD subunit
RifSed_csp1_16ft_2_scaffold_11542_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3673..3930)
DNA (258bp) protein (86aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RNA polymerase Rpb5 (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ11_METZD
RifSed_csp1_16ft_2_scaffold_11542_trna_1
unknown

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comp(3952..4044)
DNA (93bp)
transferRNA Lys
RifSed_csp1_16ft_2_scaffold_11542_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4215..4886)
DNA (672bp) protein (224aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=TPIS_METBU
RifSed_csp1_16ft_2_scaffold_11542_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4907..5677)
DNA (771bp) protein (257aa)
UPI0003D1B117 related cluster Tax=unknown RepID=UPI0003D1B117
RecA-superfamily ATPase possibly involved in signal transduction {ECO:0000313|EMBL:KCZ72729.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative circadian clock protein KaiC
RifSed_csp1_16ft_2_scaffold_11542_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5825..6529
DNA (705bp) protein (235aa)
Phosphoribosyltransferase Tax=Methanolobus psychrophilus R15 RepID=K4MNH5_9EURY
Putative phosphoribosyltransferase {ECO:0000313|EMBL:KCZ72728.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
phosphoribosyltransferase
RifSed_csp1_16ft_2_scaffold_11542_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6534..7391
DNA (858bp) protein (286aa)
S-methyl-5'-thioadenosine phosphorylase Tax=Methanolobus psychrophilus R15 RepID=K4MC73_9EURY
methylthioadenosine phosphorylase
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 10 items

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