ggKbase home page

RifSed_csp2_16ft_3_scaffold_3807

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_3807_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2..178
DNA (177bp) protein (59aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72897.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_3807_2

Not on your lists

comp(206..1390)
DNA (1185bp) protein (395aa)
Methionine gamma-lyase (EC:4.4.1.11)
Cys/Met metabolism PLP-dependent enzyme family protein Tax=uncultured archaeon RepID=D1JAT8_9ARCH
Cys/Met metabolism PLP-dependent enzyme family protein {ECO:0000313|EMBL:CBH39218.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
RifSed_csp2_16ft_3_scaffold_3807_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1415..1645)
DNA (231bp) protein (77aa)
Archaeal histone Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7P3_METMS
Histones H3 and H4 {ECO:0000313|EMBL:KCZ72620.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
archaeal histone
RifSed_csp2_16ft_3_scaffold_3807_4
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1765..2091
DNA (327bp) protein (109aa)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
Glutamate dehydrogenase bin=GWC2_Nitrospirae_57_13 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
glutamate dehydrogenase/leucine dehydrogenase
RifSed_csp2_16ft_3_scaffold_3807_5
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2112..2846
DNA (735bp) protein (245aa)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens.;"
Glutamate dehydrogenase bin=GWD2_Nitrospirae-related_57_8 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Glu/Leu/Phe/Val dehydrogenase
RifSed_csp2_16ft_3_scaffold_3807_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2820..3695)
DNA (876bp) protein (292aa)
Agmatinase {ECO:0000313|EMBL:KCZ72619.1}; EC=3.5.3.11 {ECO:0000313|EMBL:KCZ72619.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
speB; agmatinase (EC:3.5.3.11)
UPI0003D1A7D8 related cluster Tax=unknown RepID=UPI0003D1A7D8
RifSed_csp2_16ft_3_scaffold_3807_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(3695..4081)
DNA (387bp) protein (129aa)
Translation initiation factor 5A Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KTK6_METHD
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_00085}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation initiation factor eIF-5A
RifSed_csp2_16ft_3_scaffold_3807_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4131..5534)
DNA (1404bp) protein (468aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
RifSed_csp2_16ft_3_scaffold_3807_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5538..6980)
DNA (1443bp) protein (481aa)
tRNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3807_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7002..7427)
DNA (426bp) protein (142aa)
Protein archease {ECO:0000256|HAMAP-Rule:MF_01222}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3807_11
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7682..7987)
DNA (306bp) protein (102aa)
DNA polymerase beta domain protein region Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E7J9_METEZ
DNA polymerase beta domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
RifSed_csp2_16ft_3_scaffold_3807_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8293..8700
DNA (408bp) protein (136aa)
Putative signal transduction protein with CBS domains Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E881_METMS
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ73607.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
signal transduction protein with CBS domains
RifSed_csp2_16ft_3_scaffold_3807_13
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8703..9311)
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8D3_METEZ
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3807_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9308..10168)
DNA (861bp) protein (287aa)
Conserved membrane protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46FR8_METBF
Putative membrane protein {ECO:0000313|EMBL:KCZ73609.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3807_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

10190..11257
DNA (1068bp) protein (356aa)
egsA; NAD(P)-dependent glycerol-1-phosphate dehydrogenase (EC:1.1.1.261)
Glycerol-1-phosphate dehydrogenase [NAD(P)+] Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=G1PDH_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3807_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11280..11726
DNA (447bp) protein (149aa)
UPF0179 protein Mthe_0220 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=Y220_METTP
UPF0179 protein ANME2D_00682 {ECO:0000256|HAMAP-Rule:MF_00498}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3807_17
unknown

Not on your lists

11728..11970
DNA (243bp) protein (81aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3807_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11970..13229
DNA (1260bp) protein (420aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EA86_METMS
RifSed_csp2_16ft_3_scaffold_3807_19

Not on your lists

comp(13259..13843)
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG12768.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
RifSed_csp2_16ft_3_scaffold_3807_20
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13933..17355
DNA (3423bp) protein (1141aa)
DNA polymerase II large subunit {ECO:0000255|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000255|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000255|HAMAP-Rule:MF_00324};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
DNA polymerase II large subunit (EC:2.7.7.7)
DNA polymerase II large subunit Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=DP2L_METBU
RifSed_csp2_16ft_3_scaffold_3807_21
GWA2_OD1_42_32, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

17477..19288
DNA (1812bp) protein (604aa)
Type III restriction protein res subunit {ECO:0000313|EMBL:KKS55877.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWA2_42_32.;"
Type III restriction protein res subunit bin=GWE2_Bacteroidetes_41_25 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWE2_Bacteroidetes_41_25 organism_group=Bacteroidetes organism_desc=Good
type III restriction protein res subunit
Displaying 21 items

View Taxonomy