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RifSed_csp2_16ft_3_scaffold_4451

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4451_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3..1616
DNA (1614bp) protein (538aa)
Lhr-like helicase {ECO:0000313|EMBL:KCZ73273.1}; EC=3.6.4.- {ECO:0000313|EMBL:KCZ73273.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Lhr-like helicase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KV59_METHD
Lhr-like helicase
RifSed_csp2_16ft_3_scaffold_4451_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1651..2226
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Methanosarcina mazei Tuc01 RepID=M1QET7_METMZ
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4451_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2327..3232)
DNA (906bp) protein (302aa)
Heterodisulfide reductase subunit B Tax=Methanolobus psychrophilus R15 RepID=K4MGI6_9EURY
heterodisulfide reductase subunit B
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4451_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3229..3672)
DNA (444bp) protein (148aa)
CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit C Tax=Methanosarcina mazei RepID=HDRC_METMA
CoB--CoM heterodisulfide reductase subunit C
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4451_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3724..4407
DNA (684bp) protein (228aa)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; Short=HPPK {ECO:0000256|HAMAP-Rule:MF_02131};; EC=2.7.6.3 {ECO:0000256|HAMAP-Rule:MF_02131};; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 6-hydroxymethyl-7,8-dihydropterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 7,8-dihydro-6-hydroxymethylpterin diphosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_02131}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAV4_METMS
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4451_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4345..7020)
DNA (2676bp) protein (892aa)
P-type ATPase, translocating {ECO:0000313|EMBL:KCZ73228.1}; EC=3.6.3.8 {ECO:0000313|EMBL:KCZ73228.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Cation-transporting P-type ATPase Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WRI5_METH6
cation-transporting ATPase
RifSed_csp2_16ft_3_scaffold_4451_7
Methanoculleus bourgensis, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7228..8313)
DNA (1086bp) protein (362aa)
dinP; DNA polymerase IV (archaeal DinB-like DNA polymerase) (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000313|EMBL:CCJ36443.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 /; MS2) (Methanogenium bourgense).;"
DNA polymerase IV Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7J933_METBM
RifSed_csp2_16ft_3_scaffold_4451_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8412..9149
DNA (738bp) protein (246aa)
2Fe-2S iron-sulfur cluster binding domain-containing protein 4 Tax=Achromobacter piechaudii HLE RepID=J4PCJ2_9BURK
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:KCZ72612.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4451_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(9561..10049)
DNA (489bp) protein (163aa)
hypothetical protein Tax=Thermococcus zilligii RepID=UPI00029AA25A
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4451_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(10046..11437)
DNA (1392bp) protein (464aa)
recombinase RecF Tax=Thermococcus zilligii RepID=UPI00029A799C
RecF/RecN/SMC N terminal domain
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4451_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11767..11985)
DNA (219bp) protein (73aa)
Uncharacterized conserved small protein {ECO:0000313|EMBL:KCZ72268.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4451_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11982..12197)
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72269.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4451_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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12574..13215
DNA (642bp) protein (214aa)
Protein-disulfide isomerase {ECO:0000313|EMBL:KCZ73081.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Thiol:disulfide interchange protein DsbA bin=GWB2_Proteobacteria_55_19 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
DSBA oxidoreductase
RifSed_csp2_16ft_3_scaffold_4451_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(13208..14878)
DNA (1671bp) protein (557aa)
UPI0003D1A8B5 related cluster Tax=unknown RepID=UPI0003D1A8B5
Cytochrome c biogenesis protein {ECO:0000313|EMBL:KCZ73080.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cytochrome c biogenesis protein transmembrane region
RifSed_csp2_16ft_3_scaffold_4451_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14868..16268)
DNA (1401bp) protein (467aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B353 related cluster Tax=unknown RepID=UPI0003D1B353
tRNA CCA-pyrophosphorylase
RifSed_csp2_16ft_3_scaffold_4451_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(16228..17829)
DNA (1602bp) protein (534aa)
DNA mismatch repair protein MutS Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=MUTS_METBU
DNA mismatch repair protein MutS
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying 16 items

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