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RifSed_csp2_16ft_3_scaffold_10219

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_10219_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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416..703
DNA (288bp) protein (96aa)
Uncharacterized protein Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I660_METCZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ73319.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_10219_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(732..1049)
DNA (318bp) protein (106aa)
id=5046914 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10219_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1049..1588)
DNA (540bp) protein (180aa)
id=5046915 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10219_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1762..2955)
DNA (1194bp) protein (398aa)
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:KCZ73320.1}; EC=3.6.4.13 {ECO:0000313|EMBL:KCZ73320.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ATP-dependent RNA helicase Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU01_METMA
putative ATP-dependent RNA helicase
RifSed_csp2_16ft_3_scaffold_10219_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3252..4094)
DNA (843bp) protein (281aa)
Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; MTNA-like protein {ECO:0000256|HAMAP-Rule:MF_01678}; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
aIF-2BI family translation initiation factor (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E603_METEZ
RifSed_csp2_16ft_3_scaffold_10219_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4266..4835
DNA (570bp) protein (190aa)
Putative archaeal kinase Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I4F5_METCZ
kinase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10219_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4893..5063
DNA (171bp) protein (57aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6F8_METEZ
Putative Zn-ribbon RNA-binding protein with a function in translation {ECO:0000313|EMBL:KCZ72526.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_10219_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5069..5335
DNA (267bp) protein (89aa)
Elongation factor 1-beta Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPM5_METZD
translation elongation factor aEF-1 beta
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10219_trna_1
unknown

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5374..5445
DNA (72bp)
transferRNA Ala
RifSed_csp2_16ft_3_scaffold_10219_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5479..6225
DNA (747bp) protein (249aa)
Putative glycosyltransferase Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YV10_METPS
putative glycosyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_10219_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6322..6633
DNA (312bp) protein (104aa)
UPF0107 protein MCP_2309 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z109_METPS
UPF0107 protein ANME2D_00866 {ECO:0000256|HAMAP-Rule:MF_00078}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_10219_11
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6649..7377)
DNA (729bp) protein (243aa)
id=3256925 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Tax=GWC2_Deltaproteobacteria_65_14_curated
RifSed_csp2_16ft_3_scaffold_10219_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7509..7913)
DNA (405bp) protein (135aa)
Cytochrome c-type biogenesis protein CcmE {ECO:0000313|EMBL:KCZ72342.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_10219_13
unknown

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comp(8314..8862)
DNA (549bp) protein (183aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10219_14
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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8954..9199
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D201_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EIJ65744.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
RifSed_csp2_16ft_3_scaffold_10219_15
unknown

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9202..9390
DNA (189bp) protein (63aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10219_16
unknown

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9437..10519
DNA (1083bp) protein (361aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10219_17
unknown

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10509..11597
DNA (1089bp) protein (363aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10219_18
unknown

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comp(11570..12349)
DNA (780bp) protein (260aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_10219_19
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12675..15452)
DNA (2778bp) protein (926aa)
Type I site-specific deoxyribonuclease chain R Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WPL2_METH6
Type I site-specific deoxyribonuclease chain R
Type I site-specific deoxyribonuclease chain R {ECO:0000313|EMBL:AET65213.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
Displaying 20 items

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