ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

RifSed_csp2_16ft_3_scaffold_1151_14

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: comp(15754..17640)

Top 3 Functional Annotations

Value Algorithm Source
Arginine decarboxylase {ECO:0000256|RuleBase:RU003740}; EC=4.1.1.19 {ECO:0000256|RuleBase:RU003740};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 628.0
  • Bit_score: 1098
  • Evalue 0.0
arginine decarboxylase (EC:4.1.1.19) similarity KEGG
DB: KEGG
  • Identity: 49.1
  • Coverage: 627.0
  • Bit_score: 663
  • Evalue 4.70e-188
Arginine decarboxylase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJD0_CHLTF similarity UNIREF
DB: UNIREF100
  • Identity: 49.1
  • Coverage: 627.0
  • Bit_score: 663
  • Evalue 1.70e-187

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1887
ATGTGGAAAATCGAAGATGCAATAGATCTATATGGAATAGAACGATGGGGCAACGGATATTTCTCTTTTAATAAAAATGGTAATCTGATAATCAAACCAACAAAAAAGGACGCTCAGATTATTGATCTAAAAAATGTGATCGAACATCTTACCACAAAAAAAATAAAATTCCCTATTCTATTCAGATTTCCTCAGATCCTTGAAGCGCAGATAAAGGAACTGAACGGAGCCTTTGCCAACTCGATATCCGAGTTCAAGTATAACAGCACATATCAGAGCGCGTTCCCCATGAAGGTGAACCAGCGCAGAGAGGTGATCGAGGAGATCGTCAAATCCGGGAAAAAATTCAATCTCGGTCTGGAAGTGGGAACAAAAGCAGAACTGCTTGCAGCCCTGTCCTTTGAACTCAGTCCAGAAGCAGCTCTGATATGCAATGGATTCAAAGATGATGAATATCTCAAACTGGCATTGAACTCGGTCAAATTAAAAAACAAGGTGATCATTGTCATAGACGAGTACAGCGAAACAAAACGCCTGCTCGAGCTTTCAAAAAGCCTGGGAGTAAAACCATTGATCGGCATCAGGGTGAAACTGTACTCAAAAGGCAGCGGAAAATGGGCGGAATCCGGAGGTGAATCCTCGAAATTCGGGCTTACAACTGCTGAAATGCTGGATTGCATAAAGACCATTACTGATTATGATATGATCGAGCAGGTGCAGATGCTGCATTTCCATATAGGCTCGCAGATAACAGAGATCAGGAGGATACAGAAGGCGGTCAAAGAGGCTGCAAGGGTGTATGCCAAAATAAGAAATATGCATATAAACATCAAATATTTCAATATCGGTGGCGGGCTTGGCATAGATTATGACGGCAGTAAGACCTCTTCGGACGCAAGCGCCAATTATACGATACAGGAGTATGCCAATAATGTTGTGTATTCCCTGAAAGATGTGTGTGATGAAGAAGGAGTTCCTCATCCTGTGATATTATCAGAGAGCGGACGCGCATTAAGCGCATACCATTCGCTGCTTGTCATCAACATCAAAGGCAATAAGAACGGCAACAATAAAAAGCAGATAGAACTGAAGGGAAATGAGCCGCATATCATAAAGGAATTCTATGATGGATTGAAAGAGATCAGCATTAAGAATTATGTGGAGTATTATCACGATGCTATCCAGCACCGTGAAGAATTGCTTTCATTGTTCAACCTTGGTGAGATAGAACTTGAGGATAAATCCAAAGGAGAGATCCTTTTCTATCAGATATGCGAAAAAGCCGCAAGCTTTGCCAGAGAAAACGTAAACAAGTCCGATGACTTTGAGGATCTCAATAAACTCCTCTCAAAAAAATATATCGGCAATTTTTCGATCTTCCAGTCCATACCGGATTTCTGGGCAATAAAGCAACTGTTCCCGATAGTGCCTGTGAGCAGGGCAAATGAGAAGCCTGCTGAATACGGCACCATAGTGGATATCACATGCGACTCAGACGGGGAAATAGATAAATTCGTGGACTTAAAGGACGTCAAGGAGATCCTTGAACTCCATGAGTTGAACAACGGCTCCTATTATCTGGCGATCCTGATGCTCGGAGCTTACCAGGATACGATAGGGGATTATCACAATCTGTTCGGCGCCGCAAATGAAGCGCATATCATAGTGGACGACCGGGGAGAATGGCACATCAAACAGATCGTGAACGGGGACAGGAACTGCGATGTCCTGGGTTATGTCAAGTATAATTCCAACAGTCTTCTTACGACGTTCGAATCAGAACTGGTTCAGGCACAGAGGGATAATAGACTATCCAAAACCGATGCAGAAGGGATCCTGAATACTTATAAGGATGCCATGAACCAGTACACGTATATGGATTTATAG
PROTEIN sequence
Length: 629
MWKIEDAIDLYGIERWGNGYFSFNKNGNLIIKPTKKDAQIIDLKNVIEHLTTKKIKFPILFRFPQILEAQIKELNGAFANSISEFKYNSTYQSAFPMKVNQRREVIEEIVKSGKKFNLGLEVGTKAELLAALSFELSPEAALICNGFKDDEYLKLALNSVKLKNKVIIVIDEYSETKRLLELSKSLGVKPLIGIRVKLYSKGSGKWAESGGESSKFGLTTAEMLDCIKTITDYDMIEQVQMLHFHIGSQITEIRRIQKAVKEAARVYAKIRNMHINIKYFNIGGGLGIDYDGSKTSSDASANYTIQEYANNVVYSLKDVCDEEGVPHPVILSESGRALSAYHSLLVINIKGNKNGNNKKQIELKGNEPHIIKEFYDGLKEISIKNYVEYYHDAIQHREELLSLFNLGEIELEDKSKGEILFYQICEKAASFARENVNKSDDFEDLNKLLSKKYIGNFSIFQSIPDFWAIKQLFPIVPVSRANEKPAEYGTIVDITCDSDGEIDKFVDLKDVKEILELHELNNGSYYLAILMLGAYQDTIGDYHNLFGAANEAHIIVDDRGEWHIKQIVNGDRNCDVLGYVKYNSNSLLTTFESELVQAQRDNRLSKTDAEGILNTYKDAMNQYTYMDL*