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RifSed_csp2_16ft_3_scaffold_1151

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_1151_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2..1531
DNA (1530bp) protein (510aa)
pyruvate carboxylase subunit B (EC:4.1.1.3)
Pyruvate carboxylase subunit B Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVX8_METMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1151_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1535..3022
DNA (1488bp) protein (496aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:KCZ70290.1}; EC=6.4.1.1 {ECO:0000313|EMBL:KCZ70290.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pyruvate carboxylase subunit A (EC:6.4.1.1)
UPI0003D1BFD2 related cluster Tax=unknown RepID=UPI0003D1BFD2
RifSed_csp2_16ft_3_scaffold_1151_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2979..4001
DNA (1023bp) protein (341aa)
Biotin-(Acetyl-CoA carboxylase) ligase {ECO:0000313|EMBL:KCZ70289.1}; EC=6.3.4.15 {ECO:0000313|EMBL:KCZ70289.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
BirA, biotin-(Acetyl-CoA-carboxylase) ligase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KY84_METHD
birA, biotin-(acetyl-CoA-carboxylase) ligase
RifSed_csp2_16ft_3_scaffold_1151_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4195..5010
DNA (816bp) protein (272aa)
Exosortase EpsH-related protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E955_METEZ
Archaeosortase A, PGF-CTERM-specific {ECO:0000313|EMBL:KCZ73362.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
exosortase EpsH-like protein
RifSed_csp2_16ft_3_scaffold_1151_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5000..5632
DNA (633bp) protein (211aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1C62A related cluster Tax=unknown RepID=UPI0003D1C62A
phosphatidylserine decarboxylase precursor-related protein
RifSed_csp2_16ft_3_scaffold_1151_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5634..6299
DNA (666bp) protein (222aa)
Archaetidylserine synthase {ECO:0000313|EMBL:KCZ73360.1}; EC=2.7.8.- {ECO:0000313|EMBL:KCZ73360.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-diacylglycerol--serine O-phosphatidyltransferase (Phosphatidylserine synthase) Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BWJ3_METCG
RifSed_csp2_16ft_3_scaffold_1151_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6286..6642
DNA (357bp) protein (119aa)
Dihydroneopterin aldolase {ECO:0000256|HAMAP-Rule:MF_02130}; Short=DHNA {ECO:0000256|HAMAP-Rule:MF_02130};; EC=4.1.2.25 {ECO:0000256|HAMAP-Rule:MF_02130};; 7,8-dihydroneopterin aldolase {ECO:0000256|HAMAP-Rule:MF_02130}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Dihydroneopterin aldolase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXK0_METHD
hypothetical protein
RifSed_csp2_16ft_3_scaffold_1151_8
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6644..6850
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZF6_METCG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB69026.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
RifSed_csp2_16ft_3_scaffold_1151_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6854..7903)
DNA (1050bp) protein (350aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TJB9_METAC
NMD protein affecting ribosome stability and mRNA decay {ECO:0000313|EMBL:KCZ73369.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
NMD protein affecting ribosome stability and mRNA decay
RifSed_csp2_16ft_3_scaffold_1151_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7896..8879)
DNA (984bp) protein (328aa)
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:KCZ73368.1}; EC=5.1.3.2 {ECO:0000313|EMBL:KCZ73368.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UDP-glucose 4-epimerase (EC:5.1.3.2)
dTDP-glucose 4,6-dehydratase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DF2_METBF
RifSed_csp2_16ft_3_scaffold_1151_11
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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9023..13570
DNA (4548bp) protein (1516aa)
Tetratricopeptide repeat domain lipoprotein Tax=uncultured bacterium CSL12 RepID=G4WVI5_9BACT
type III secretion protein LcrD/AscV
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
RifSed_csp2_16ft_3_scaffold_1151_12

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13557..15194
DNA (1638bp) protein (546aa)
Tetratricopeptide repeat domain lipoprotein Tax=uncultured bacterium CSL12 RepID=G4WVI5_9BACT
Tetratricopeptide repeat domain lipoprotein {ECO:0000313|EMBL:AEQ20437.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium CSL12.;"
yscV; type III secretion pore protein
RifSed_csp2_16ft_3_scaffold_1151_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15220..15750)
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L0B7_METHD
Uncharacterized protein {ECO:0000313|EMBL:KCZ73367.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_1151_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15754..17640)
DNA (1887bp) protein (629aa)
Arginine decarboxylase {ECO:0000256|RuleBase:RU003740}; EC=4.1.1.19 {ECO:0000256|RuleBase:RU003740};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
arginine decarboxylase (EC:4.1.1.19)
Arginine decarboxylase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJD0_CHLTF
RifSed_csp2_16ft_3_scaffold_1151_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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17862..24776
DNA (6915bp) protein (2305aa)
Uncharacterized protein Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S3K8_FERPA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1151_16
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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25426..26082
DNA (657bp) protein (219aa)
Lrp/AsnC family transcriptional regulator Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12UD4_METBU
AsnC family transcriptional regulator
Lrp/AsnC family transcriptional regulator {ECO:0000313|EMBL:ABE52942.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
RifSed_csp2_16ft_3_scaffold_1151_17
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26077..26940)
DNA (864bp) protein (288aa)
UbiA prenyltransferase-family protein Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12UD5_METBU
UbiA prenyltransferase
UbiA prenyltransferase-family protein {ECO:0000313|EMBL:ABE52941.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
RifSed_csp2_16ft_3_scaffold_1151_18
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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27249..27755
DNA (507bp) protein (169aa)
Tax=RBG_16_OP11_Levybacteria_35_11_curated
RifSed_csp2_16ft_3_scaffold_1151_19
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(27803..28969)
DNA (1167bp) protein (389aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQ62_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM05097.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
RifSed_csp2_16ft_3_scaffold_1151_20
unknown

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29226..29525
DNA (300bp) protein (100aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_1151_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

29527..29790
DNA (264bp) protein (88aa)
Putative uncharacterized protein C5_0051 Tax=uncultured archaeon RepID=Q2Y4V5_9ARCH
Putative transcriptional regulator {ECO:0000313|EMBL:KCZ72452.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_1151_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

29921..30130
DNA (210bp) protein (70aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_1151_23
unknown

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comp(30631..30783)
DNA (153bp) protein (51aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_1151_24
unknown

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comp(30863..31069)
DNA (207bp) protein (69aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_1151_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(31259..31777)
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3A3J7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KCZ70304.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_1151_26
unknown

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comp(31912..32007)
DNA (96bp) protein (32aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_1151_27
unknown

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32141..32605
DNA (465bp) protein (155aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_1151_28
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(32619..34283)
DNA (1665bp) protein (555aa)
UPI0003D1BF0F related cluster Tax=unknown RepID=UPI0003D1BF0F
DNA ligase I, ATP-dependent Dnl1
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_1151_29
unknown

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comp(34346..34480)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 29 items

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