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BSR_Lac_LFCR_na_at_50065

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_Lac_LFCR_na_at_50065_1
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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1..1062
DNA (1062bp) protein (354aa)
Putative endonuclease n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AWG7_9FIRM
Putative endonuclease {ECO:0000313|EMBL:CCX47700.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
putative endonuclease
BSR_Lac_LFCR_na_at_50065_2
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1215..1745
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T3U0X8_CLODI
Uncharacterised protein {ECO:0000313|EMBL:CEO23715.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
BSR_Lac_LFCR_na_at_50065_trna_2
unknown

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comp(1829..1902)
DNA (74bp)
transferRNA Met
BSR_Lac_LFCR_na_at_50065_trna_1
unknown

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comp(1923..1997)
DNA (75bp)
transferRNA Pro
BSR_Lac_LFCR_na_at_50065_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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2137..2985
DNA (849bp) protein (283aa)
Putative membrane protein id=4223729 bin=GWF2_Firmicute_51_9 species=Anaerofustis stercorihominis genus=Anaerofustis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
BSR_Lac_LFCR_na_at_50065_4
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3015..4649
DNA (1635bp) protein (545aa)
Metallo-beta-lactamase family protein, RNA-specific n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ASY4_9CLOT
Metallo-beta-lactamase family protein, RNA-specific {ECO:0000313|EMBL:EOD00258.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
RNA-metabolising metallo-beta-lactamase
BSR_Lac_LFCR_na_at_50065_5
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4678..5040)
DNA (363bp) protein (121aa)
UPF0342 protein ELI_3735 n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GG86_EUBLK
hypothetical protein
UPF0342 protein ELI_3735 {ECO:0000256|HAMAP-Rule:MF_01526}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
BSR_Lac_LFCR_na_at_50065_6
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5062..6756)
DNA (1695bp) protein (565aa)
Ribonuclease J1 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PRU8_CLOSD
rnjA; ribonuclease J1
Ribonuclease J1 {ECO:0000313|EMBL:CBH21602.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
BSR_Lac_LFCR_na_at_50065_7
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6757..7011)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG76149.1}; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
hypothetical protein
BSR_Lac_LFCR_na_at_50065_8
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7012..7434)
DNA (423bp) protein (141aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
putative holliday junction resolvase (EC:3.1.-.-)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI000362A071
BSR_Lac_LFCR_na_at_50065_9
Clostridium sp. CAG:273, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7616..8281)
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262789 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:273.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium sp. CAG:273 RepID=R7LA39_9CLOT
16S rRNA (guanine(527)-N(7))-methyltransferase GidB
BSR_Lac_LFCR_na_at_50065_10
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8318..9034)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000378A147
Predicted Zn-dependent hydrolases of the beta-lactamase fold {ECO:0000313|EMBL:CDE56345.1}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
metal dependent hydrolase
BSR_Lac_LFCR_na_at_50065_11
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

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9092..9877
DNA (786bp) protein (262aa)
Nitroreductase id=3728796 bin=GWF2_Nitrospirae_44_13 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
nitroreductase
Tax=GWF2_Nitrospirae_44_13_curated
BSR_Lac_LFCR_na_at_50065_12
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10279..10704)
DNA (426bp) protein (142aa)
Anti-sigma F factor {ECO:0000256|HAMAP-Rule:MF_00637}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00637};; Stage II sporulation protein AB {ECO:0000256|HAMAP-Rule:MF_00637}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
anti-sigma F factor (EC:2.7.11.1)
ATPase n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002D81115
BSR_Lac_LFCR_na_at_50065_13
Paenibacillus popilliae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10701..11054)
DNA (354bp) protein (118aa)
Anti-sigma F factor antagonist n=1 Tax=Paenibacillus popilliae ATCC 14706 RepID=M9LR78_PAEPP
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=1212764 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus popilliae ATCC 14706.;"
anti-sigma-factor antagonist
BSR_Lac_LFCR_na_at_50065_14
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11119..12270)
DNA (1152bp) protein (384aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
Probable tRNA sulfurtransferase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GNB1_EUBLK
thiamine biosynthesis/tRNA modification protein ThiI
BSR_Lac_LFCR_na_at_50065_15
Thermoanaerobacter sp. YS13, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(12267..13433)
DNA (1167bp) protein (389aa)
Cysteine desulfurase {ECO:0000313|EMBL:KHO62825.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KHO62825.1};; TaxID=1511746 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter sp. YS13.;"
iscS; cysteine desulfurase IscS (EC:2.8.1.7)
cysteine desulfarase n=1 Tax=Thermoanaerobacter indiensis RepID=UPI00036735A0
BSR_Lac_LFCR_na_at_50065_16
Caldicellulosiruptor obsidiansis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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13623..14933
DNA (1311bp) protein (437aa)
Pyruvate carboxyltransferase n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TIF9_CALOO
pyruvate carboxyltransferase
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ADL41791.1}; TaxID=608506 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47).;"
BSR_Lac_LFCR_na_at_50065_17
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14977..15537)
DNA (561bp) protein (187aa)
Elongation factor P n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GFW4_EUBLK
hypothetical protein
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
BSR_Lac_LFCR_na_at_50065_18
Halothermothrix orenii, Halothermothrix, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(15592..16095)
DNA (504bp) protein (168aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=373903 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halothermothrix.;" source="Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562).;"
Shikimate kinase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D2E1_HALOH
BSR_Lac_LFCR_na_at_50065_19
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16117..16824)
DNA (708bp) protein (236aa)
RNA polymerase sigma 70 n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D454
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
RNA polymerase sigma 28 subunit SigK
BSR_Lac_LFCR_na_at_50065_20
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16961..17977)
DNA (1017bp) protein (339aa)
Cell division protein FtsZ n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LCH0_ACEWD
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
BSR_Lac_LFCR_na_at_50065_21
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18067..18828)
DNA (762bp) protein (254aa)
POTRA domain protein, FtsQ-type n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8G2_9FIRM
POTRA domain protein, FtsQ-type {ECO:0000313|EMBL:EDS73299.1}; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
ftsQ; division initiation protein FtsQ
BSR_Lac_LFCR_na_at_50065_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(18862..19119)
DNA (258bp) protein (86aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WV31_GEOS8
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Displaying 24 items

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