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BSR_Lac_LFCR_na_at_30540

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_Lac_LFCR_na_at_30540_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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53..397
DNA (345bp) protein (115aa)
Transposase (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYD6_9FIRM
Transposase {ECO:0000313|EMBL:ERJ97100.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
putative transposase
BSR_Lac_LFCR_na_at_30540_2

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394..1236
DNA (843bp) protein (281aa)
Integrase core domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KF17_9FIRM
Uncultured bacterium extrachromosomal DNA RGI01869 {ECO:0000313|EMBL:CDL66704.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
integrase catalytic subunit
BSR_Lac_LFCR_na_at_30540_3
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1436..2203)
DNA (768bp) protein (256aa)
RNA polymerase sigma-G factor n=2 Tax=Clostridium tetani RepID=U6EXN8_CLOTA
sigG; RNA polymerase sigma-G factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 12124569.;"
BSR_Lac_LFCR_na_at_30540_4
Clostridium sp. CAG:921, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2266..2988)
DNA (723bp) protein (241aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:921 RepID=R5KXC1_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262847 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:921.;"
sigE; RNA polymerase sigma-E factor SigE
BSR_Lac_LFCR_na_at_30540_5
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2969..3856)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5PXW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ21028.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
BSR_Lac_LFCR_na_at_30540_6
unknown

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4103..4633
DNA (531bp) protein (177aa)

This feature has no annotations

BSR_Lac_LFCR_na_at_30540_7
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4660..5397)
DNA (738bp) protein (246aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EOC99990.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EOC99990.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CMT5_9CLOT
BSR_Lac_LFCR_na_at_30540_8
Borrelia hermsii, Borrelia, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(5425..6702)
DNA (1278bp) protein (426aa)
TraB family protein n=1 Tax=Borrelia bissettii (strain DN127) RepID=G0ALL6_BORBD
Pheromone shutdown protein {ECO:0000313|EMBL:AHH13913.1}; TaxID=1313291 species="Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.;" source="Borrelia hermsii MTW.;"
pheromone shutdown protein
BSR_Lac_LFCR_na_at_30540_9
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6712..9630)
DNA (2919bp) protein (973aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GDW0_EUBLK
Uncharacterized protein {ECO:0000313|EMBL:ADO37040.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
hypothetical protein
BSR_Lac_LFCR_na_at_30540_10
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9661..10914)
DNA (1254bp) protein (418aa)
proA; Gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Gamma-glutamyl phosphate reductase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RNU8_9CLOT
BSR_Lac_LFCR_na_at_30540_11
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10907..11707)
DNA (801bp) protein (267aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBI2_9CLOT
BSR_Lac_LFCR_na_at_30540_12
unknown

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comp(11746..12162)
DNA (417bp) protein (139aa)

This feature has no annotations

BSR_Lac_LFCR_na_at_30540_13
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12155..13969)
DNA (1815bp) protein (605aa)
UvrABC system protein C n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GG37_EUBLK
excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
Displaying 13 items

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