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This organism can only be binned in the context of its binning project RIFCSPHIGHO2_02_FULL. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

BSR_inoc_114660

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_inoc_114660_trna_1
unknown

Not on your lists

comp(133..203)
DNA (71bp)
transferRNA Gly
BSR_inoc_114660_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(334..1236)
DNA (903bp) protein (301aa)
Transferase n=13 Tax=Pseudomonas aeruginosa RepID=S0IBI3_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75744.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
(R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase)
BSR_inoc_114660_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1688..2425)
DNA (738bp) protein (246aa)
Uncharacterized protein n=75 Tax=Pseudomonas aeruginosa RepID=B7UZ13_PSEA8
hypothetical protein
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75745.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ41761.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
BSR_inoc_114660_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2505..3548)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=6 Tax=Pseudomonas aeruginosa RepID=U8QPS5_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EZO88870.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
hypothetical protein
BSR_inoc_114660_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3684..4376)
DNA (693bp) protein (231aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
Ribosomal small subunit pseudouridine synthase A n=6 Tax=Pseudomonas aeruginosa RepID=U8QPA2_PSEAI
putative pseudouridylate synthase
BSR_inoc_114660_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4376..4588)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa HB13 RepID=U1E4V3_PSEAI
DNA or RNA helicases of superfamily II
Uncharacterized protein {ECO:0000313|EMBL:AHW72926.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
BSR_inoc_114660_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4669..5484)
DNA (816bp) protein (272aa)
Uncharacterized protein n=6 Tax=Pseudomonas aeruginosa RepID=U8QL27_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75749.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Hypothetical protein
BSR_inoc_114660_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5481..6557)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=44 Tax=Pseudomonas aeruginosa RepID=K1D5Q8_PSEAI
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AKE71581.1}; Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75750.1}; Uncharacterized protein {ECO:0000313|EMBL:CEI17495.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
BSR_inoc_114660_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6796..6969
DNA (174bp) protein (58aa)
Uncharacterized protein n=86 Tax=Pseudomonas RepID=B7UZ07_PSEA8
Hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:CEI17499.1}; Uncharacterised protein {ECO:0000313|EMBL:CKI04053.1}; Uncharacterized protein {ECO:0000313|EMBL:AKE73475.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
BSR_inoc_114660_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7065..7520
DNA (456bp) protein (152aa)
Uncharacterized protein n=82 Tax=Pseudomonas aeruginosa RepID=B7UZ06_PSEA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHW72922.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
BSR_inoc_114660_10
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7637..7882
DNA (246bp) protein (82aa)
Uncharacterized protein n=123 Tax=Pseudomonas RepID=B7UZ05_PSEA8
hypothetical protein
Membrane protein {ECO:0000313|EMBL:AKE71579.1}; Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75752.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ41753.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
BSR_inoc_114660_11
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8005..8193
DNA (189bp) protein (63aa)
Uncharacterized protein n=88 Tax=Pseudomonas aeruginosa RepID=I6RR18_PSEAI
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZO88862.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
BSR_inoc_114660_12
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8197..9111)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=36 Tax=Pseudomonas aeruginosa RepID=U6AI56_PSEAI
putative transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EZO88861.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
BSR_inoc_114660_13
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9214..11190
DNA (1977bp) protein (659aa)
SDS hydrolase SdsA1 n=24 Tax=Pseudomonas aeruginosa RepID=Q9I5I9_PSEAE
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75754.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Alkyl sulfatase
BSR_inoc_114660_14
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11225..11866)
DNA (642bp) protein (214aa)
Uncharacterized protein n=40 Tax=Pseudomonas RepID=M9SAT9_PSEAI
3-beta hydroxysteroid dehydrogenase
3-beta hydroxysteroid dehydrogenase {ECO:0000313|EMBL:ETD50790.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
BSR_inoc_114660_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11982..12626)
DNA (645bp) protein (215aa)
Uncharacterized protein n=114 Tax=Pseudomonas RepID=G4LMY8_PSEAI
Potassium channel protein
Uncharacterized protein {ECO:0000313|EMBL:ERV76909.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
BSR_inoc_114660_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12683..13579)
DNA (897bp) protein (299aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
3-hydroxyisobutyrate dehydrogenase n=57 Tax=Pseudomonas RepID=M9S4D7_PSEAI
3-hydroxyisobutyrate dehydrogenase
BSR_inoc_114660_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13691..14794)
DNA (1104bp) protein (368aa)
3-hydroxyisobutyryl-CoA hydrolase (EC:3.1.2.4)
Enoyl-CoA hydratase/isomerase n=64 Tax=Pseudomonas RepID=I6T1I6_PSEAI
Enoyl-CoA hydratase {ECO:0000313|EMBL:EVT87311.1}; TaxID=1441931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA09.;"
BSR_inoc_114660_18
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14853..15671)
DNA (819bp) protein (273aa)
Enoyl-CoA hydratase n=125 Tax=Pseudomonas RepID=G2L675_PSEAI
enoyl-CoA hydratase
Probable enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AAG04134.1}; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
BSR_inoc_114660_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15737..16900)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase n=15 Tax=Pseudomonas aeruginosa RepID=N4WAL8_PSEAI
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EZO88854.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
BSR_inoc_114660_20
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16912..18420)
DNA (1509bp) protein (503aa)
Methylmalonate-semialdehyde dehydrogenase (Acylating) n=7 Tax=Pseudomonas aeruginosa RepID=U8QRH5_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75760.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
methylmalonate-semialdehyde dehydrogenase
BSR_inoc_114660_21
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18553..19434
DNA (882bp) protein (294aa)
MmsAB operon regulatory protein n=70 Tax=Pseudomonas aeruginosa RepID=R9Z9D2_PSEAI
transcriptional regulator, AraC family protein
Transcriptional regulator {ECO:0000313|EMBL:ETU92709.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
BSR_inoc_114660_22
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19491..20312
DNA (822bp) protein (274aa)
Uncharacterized protein n=33 Tax=Pseudomonas aeruginosa RepID=B7UYZ3_PSEA8
vancomycin resistance protein
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75762.1}; Vancomycin resistance protein {ECO:0000313|EMBL:CKI03665.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
BSR_inoc_114660_23
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20412..21107
DNA (696bp) protein (232aa)
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00148}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_00148};; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
Uracil-DNA glycosylase n=79 Tax=Pseudomonas RepID=UNG_PSEA7
BSR_inoc_114660_24
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21233..22270)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=84 Tax=Pseudomonas RepID=B7UYZ1_PSEA8
hypothetical protein
Ammonia monooxygenase {ECO:0000313|EMBL:BAR69513.1}; Membrane protein {ECO:0000313|EMBL:AKE71565.1}; Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75764.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
BSR_inoc_114660_25
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22263..23780)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=53 Tax=Pseudomonas RepID=B7UYZ0_PSEA8
tripartite tricarboxylate transporter TctA
Uncharacterized protein {ECO:0000313|EMBL:AHW72906.1}; TaxID=1457392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PA96.;"
BSR_inoc_114660_26
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23791..24261)
DNA (471bp) protein (157aa)
Uncharacterized protein n=70 Tax=Pseudomonas aeruginosa RepID=B7UYY9_PSEA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZO88847.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
BSR_inoc_114660_27
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24310..25293)
DNA (984bp) protein (328aa)
Uncharacterized protein n=125 Tax=Pseudomonas aeruginosa RepID=B7UYY8_PSEA8
Tricarboxylate transport protein TctC
Uncharacterized protein {ECO:0000313|EMBL:ETU92703.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
BSR_inoc_114660_28
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25323..26606)
DNA (1284bp) protein (428aa)
Porin {ECO:0000313|EMBL:AKE71562.1}; EC=3.4.21.- {ECO:0000313|EMBL:CKI03487.1};; Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI75768.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
Porin n=33 Tax=Pseudomonas aeruginosa RepID=I6S355_PSEAI
Tricarboxylate porin OpdH
BSR_inoc_114660_29
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26817..27488
DNA (672bp) protein (224aa)
Two-component response regulator n=125 Tax=Pseudomonas RepID=G4LNF9_PSEAI
Tricarboxylate transport transcriptional regulator TctD
Transcriptional regulator {ECO:0000313|EMBL:ETD50804.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
Displaying items 1-30 of 57 in total

View Taxonomy