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BSR_inoc_148124

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_inoc_148124_1
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..726)
DNA (726bp) protein (242aa)
branched-chain amino acid ABC transporter permease n=1 Tax=[Streptococcus] pleomorphus RepID=UPI0003B654EA
amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-)
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-) {ECO:0000313|EMBL:CBK88358.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
BSR_inoc_148124_2
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(729..1601)
DNA (873bp) protein (291aa)
UPI0002FB92E6 related cluster n=1 Tax=unknown RepID=UPI0002FB92E6
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EEF67601.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
livH; branched-chain amino acid transport system / permease component family protein
BSR_inoc_148124_3
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1677..2837)
DNA (1161bp) protein (387aa)
ABC transporter periplasmic subunit n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VNG0_CLOSH
livK; high-affinity branched-chain amino acid ABC transporter systemsubstrate binding protein LivK
High-affinity branched-chain amino acid ABC transporter systemsubstrate binding protein LivK {ECO:0000313|EMBL:AGC68001.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
BSR_inoc_148124_4
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2988..4724)
DNA (1737bp) protein (579aa)
Hydrogenase, Fe-only {ECO:0000313|EMBL:EDS74444.1}; EC=1.12.-.- {ECO:0000313|EMBL:EDS74444.1};; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Hydrogenase, Fe-only n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C460_9FIRM
hydrogenase, fe-only
BSR_inoc_148124_5
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(4735..6534)
DNA (1800bp) protein (600aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
Putative uncharacterized protein id=1897763 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_148124_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(6543..6908)
DNA (366bp) protein (122aa)
UPI0002EB6911 related cluster n=1 Tax=unknown RepID=UPI0002EB6911
ferredoxin
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_148124_7
Thermoanaerobacter italicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6905..7459)
DNA (555bp) protein (185aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=580331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter italicus (strain DSM 9252 / Ab9).;"
Histidine kinase n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T823_THEIA
histidine kinase
BSR_inoc_148124_8
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7456..8151)
DNA (696bp) protein (232aa)
UPI0002EBFB65 related cluster n=1 Tax=unknown RepID=UPI0002EBFB65
Uncharacterized protein {ECO:0000313|EMBL:EFW04276.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
PHP domain-containing protein
BSR_inoc_148124_9
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8153..8485)
DNA (333bp) protein (111aa)
UPI0003010EBC related cluster n=1 Tax=unknown RepID=UPI0003010EBC
Uncharacterized protein {ECO:0000313|EMBL:CDF57374.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
DRTGG domain-containing protein
BSR_inoc_148124_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(8472..9668)
DNA (1197bp) protein (399aa)
4Fe-4S binding domain protein id=3477702 bin=GWF2_Firmicute_51_9 species=[Clostridium] spiroforme genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hydrogenase large subunit-like protein
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_148124_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(9665..10075)
DNA (411bp) protein (137aa)
Putative uncharacterized protein id=3477704 bin=GWF2_Firmicute_51_9 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWF2_Firmicute_51_9 organism_group=Firmicute
putative anti-sigma regulatory factor
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_148124_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(10072..10434)
DNA (363bp) protein (121aa)
Uncharacterized protein id=1897742 bin=GWE2_Firmicute_51_13 species=[Clostridium] spiroforme genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_148124_13
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10438..10929)
DNA (492bp) protein (164aa)
Respiratory-chain NADH dehydrogenase 24 Kd subunit n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y876_9FIRM
Respiratory-chain NADH dehydrogenase 24 Kd subunit {ECO:0000313|EMBL:EEF67832.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
NADH dehydrogenase (ubiquinone), 24 kDa subunit
BSR_inoc_148124_14
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11102..11536)
DNA (435bp) protein (145aa)
Zinc-specific metallo-regulatory protein {ECO:0000313|EMBL:KJJ68634.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Ferric uptake regulation protein Fur2 id=4395754 bin=GWF2_Clostridiales_38_85 species=Acetobacterium woodii genus=Acetobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
fur2; ferric uptake regulation protein Fur2
BSR_inoc_148124_trna_4
unknown

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comp(11636..11708)
DNA (73bp)
transferRNA Lys
BSR_inoc_148124_15
Photobacterium gaetbulicola, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11964..12617)
DNA (654bp) protein (218aa)
Putative esterase n=1 Tax=Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181) RepID=F6CV34_MARPP
Uncharacterized protein {ECO:0000313|EMBL:KHT62676.1}; TaxID=1295392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium gaetbulicola.;"
putative esterase
BSR_inoc_148124_16
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12684..13553)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLN2_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW17949.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
BSR_inoc_148124_trna_1
unknown

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13743..13830
DNA (88bp)
transferRNA Ser
BSR_inoc_148124_trna_2
unknown

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13845..13917
DNA (73bp)
transferRNA Asp
BSR_inoc_148124_trna_3
unknown

Not on your lists

13923..13993
DNA (71bp)
transferRNA Gly
BSR_inoc_148124_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14113..15558
DNA (1446bp) protein (482aa)
Citrate transporter n=2 Tax=Clostridiales RepID=G9YWJ5_9FIRM
Divalent anion:Na+ symporter (DASS) family transporter {ECO:0000313|EMBL:EHO34863.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Di-and tricarboxylate transporters
BSR_inoc_148124_18
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15579..15770)
DNA (192bp) protein (64aa)
Copper chaperone n=2 Tax=Erysipelothrix rhusiopathiae RepID=F5WUF8_ERYRF
copper chaperone
Uncharacterized protein {ECO:0000313|EMBL:EFY08942.1}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
BSR_inoc_148124_19
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15822..17162)
DNA (1341bp) protein (447aa)
Glutamate dehydrogenase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y2T7_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
glutamate dehydrogenase
BSR_inoc_148124_20
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17193..17906)
DNA (714bp) protein (238aa)
Purine-nucleoside phosphorylase {ECO:0000256|SAAS:SAAS00035203}; EC=2.4.2.1 {ECO:0000256|SAAS:SAAS00035203};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
UPI0002F3F364 related cluster n=1 Tax=unknown RepID=UPI0002F3F364
purine nucleoside phosphorylase DeoD-type
BSR_inoc_148124_21
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17954..19312)
DNA (1359bp) protein (453aa)
Magnesium transporter id=1975521 bin=GWE2_Firmicute_51_13 species=Parvimonas micra genus=Parvimonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
magnesium transporter
BSR_inoc_148124_22
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(19323..20678)
DNA (1356bp) protein (452aa)
Magnesium transporter id=1975519 bin=GWE2_Firmicute_51_13 species=Parvimonas micra genus=Parvimonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
magnesium transporter
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_148124_23
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20704..21288)
DNA (585bp) protein (195aa)
O-methyltransferase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y963_9FIRM
O-methyltransferase {ECO:0000313|EMBL:EEF67494.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
O-methyltransferase family protein
BSR_inoc_148124_24
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

21491..22429
DNA (939bp) protein (313aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein id=2005902 bin=GWE2_Firmicute_51_13 species=Cellulosilyticum lentocellum genus=Cellulosilyticum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
transposase IS204/IS1001/IS1096/IS1165 family protein
Tax=GWF2_Firmicutes_51_9_curated
Displaying 28 items

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