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BSR_inoc_95497

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_inoc_95497_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

3..287
DNA (285bp) protein (95aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein id=2971483 bin=GWF2_Firmicute_51_9 species=Cellulosilyticum lentocellum genus=Cellulosilyticum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
transposase is204/is1001/is1096/is1165 family protein
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_2
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(377..739)
DNA (363bp) protein (121aa)
50S ribosomal protein L17 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F6_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
rplQ; 50S ribosomal protein L17
BSR_inoc_95497_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(762..1721)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=3749329 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_4
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(1743..2135)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F4_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
30S ribosomal protein S11
BSR_inoc_95497_5
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(2157..2522)
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EBL1_THECK
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
BSR_inoc_95497_6
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2537..2653)
DNA (117bp) protein (39aa)
50S ribosomal protein L36 n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QP65_9FIRM
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
50S ribosomal protein L36
BSR_inoc_95497_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(2670..2888)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 id=3749347 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
infA; translation initiation factor IF-1
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_8
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2902..3648)
DNA (747bp) protein (249aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Methionine aminopeptidase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F1_9FIRM
methionine aminopeptidase
BSR_inoc_95497_9
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3635..4303)
DNA (669bp) protein (223aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Adenylate kinase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F0_9FIRM
adk; adenylate kinase
BSR_inoc_95497_10
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(4305..5582)
DNA (1278bp) protein (426aa)
Protein translocase subunit SecY n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6E9_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
secY; preprotein translocase subunit SecY
BSR_inoc_95497_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(5583..6023)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6E8_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
50S ribosomal protein L15
BSR_inoc_95497_12
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6037..6543)
DNA (507bp) protein (169aa)
30S ribosomal protein S5 n=2 Tax=Firmicutes RepID=A8R9H5_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
SSU ribosomal protein S5P
BSR_inoc_95497_13
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6557..6913)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6E6_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
LSU ribosomal protein L18P
BSR_inoc_95497_14
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6935..7480)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SNM0_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
LSU ribosomal protein L6P
BSR_inoc_95497_15
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(7496..7891)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SNL9_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
rpsH; 30S ribosomal protein S8
BSR_inoc_95497_16
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(7907..8092)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6E3_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
rpsN; 30S ribosomal protein S14
BSR_inoc_95497_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(8106..8648)
DNA (543bp) protein (181aa)
50S ribosomal protein L5 id=3749391 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
rplE; 50S ribosomal protein L5
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_18
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(8663..8971)
DNA (309bp) protein (103aa)
50S ribosomal protein L24 n=6 Tax=Erysipelotrichaceae RepID=E2SNL6_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
rplX; 50S ribosomal protein L24
BSR_inoc_95497_19
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(8982..9350)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=1888433 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
LSU ribosomal protein L14P
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_20
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(9373..9636)
DNA (264bp) protein (88aa)
30S ribosomal protein S17 id=3749398 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
rpsQ; 30S ribosomal protein S17
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_21
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(9651..9851)
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6D8_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
LSU ribosomal protein L29P
BSR_inoc_95497_22
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(9854..10270)
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=2 Tax=Erysipelothrix rhusiopathiae RepID=F5WTY8_ERYRF
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Erysipelothrix rhusiopathiae ATCC 19414.;"
BSR_inoc_95497_23
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(10273..11085)
DNA (813bp) protein (271aa)
30S ribosomal protein S3 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6D6_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
rpsC; 30S ribosomal protein S3
BSR_inoc_95497_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11097..11429)
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=2 Tax=Firmicutes RepID=A8R9L4_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
rplV; 50S ribosomal protein L22
BSR_inoc_95497_25
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(11439..11711)
DNA (273bp) protein (91aa)
SSU ribosomal protein S19P id=3749411 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
SSU ribosomal protein S19P
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_26
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11732..12565)
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=2 Tax=Firmicutes RepID=H1BNW9_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
LSU ribosomal protein L2P
BSR_inoc_95497_27
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(12628..12912)
DNA (285bp) protein (95aa)
50S ribosomal protein L23 id=1888441 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
rplW; 50S ribosomal protein L23
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_28
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(12912..13541)
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6D1_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
rplD; 50S ribosomal protein L4
BSR_inoc_95497_29
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(13545..14228)
DNA (684bp) protein (228aa)
50S ribosomal protein L3 id=1888443 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
rplC; 50S ribosomal protein L3
Tax=GWF2_Firmicutes_51_9_curated
BSR_inoc_95497_30
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(14238..14549)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 id=3749423 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
rpsJ; 30S ribosomal protein S10
Tax=GWF2_Firmicutes_51_9_curated
Displaying 30 items

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