ggKbase home page

BSR_inoc_2_25165

Search features with annotation key words

Displaying items 1-30 of 460 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_inoc_2_25165_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(336..944)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003739E3D
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35890.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
nudix hydrolase
BSR_inoc_2_25165_2
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1020..2345)
DNA (1326bp) protein (442aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
beta-glucosidase (EC:3.2.1.21)
beta-glucosidase n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003781916
BSR_inoc_2_25165_3
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2351..3382)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003811A36
LacI family transcriptional regulator {ECO:0000313|EMBL:ESW59335.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
transcription regulator protein
BSR_inoc_2_25165_4
Vibrio maritimus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3665..5023
DNA (1359bp) protein (453aa)
alpha-glucoside ABC transporter substrate-binding protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000371CE6B
Alpha-glucosides-binding periplasmic protein AglE {ECO:0000313|EMBL:GAL33334.1}; TaxID=990268 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio maritimus.;"
family 1 extracellular solute-binding protein
BSR_inoc_2_25165_5
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5163..6158
DNA (996bp) protein (332aa)
alpha-glucoside ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003682DA9
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACM01047.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
BSR_inoc_2_25165_6
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6158..7285
DNA (1128bp) protein (376aa)
alpha-glucoside ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI00038269A9
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABP70050.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
BSR_inoc_2_25165_7
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7332..8954
DNA (1623bp) protein (541aa)
aglA; alpha-glucosidase (EC:3.2.1.20)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036DA9F7
Uncharacterized protein {ECO:0000313|EMBL:KEO51765.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
BSR_inoc_2_25165_8
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8976..10061
DNA (1086bp) protein (362aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000369D9C1
ABC transporter related protein {ECO:0000313|EMBL:EEW25532.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
aglK; maltose ABC transporter ATP-binding protein;trehalose ABC transporter ATP-binding protein;sucrose ABC transporter ATP-binding protein
BSR_inoc_2_25165_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10073..10720)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000373B59D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU46655.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
BSR_inoc_2_25165_10
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10834..11880)
DNA (1047bp) protein (349aa)
L-idonate 5-dehydrogenase {ECO:0000313|EMBL:ESR27035.1}; EC=1.1.1.264 {ECO:0000313|EMBL:ESR27035.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
zinc-binding dehydrogenase (EC:1.1.1.264)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036ADB84
BSR_inoc_2_25165_11
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11887..13164)
DNA (1278bp) protein (426aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037D026B
TRAP-type C4-dicarboxylate transport system, large permease component {ECO:0000313|EMBL:ESR27034.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
TRAP dicarboxylate transporter subunit DctM
BSR_inoc_2_25165_12
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13161..13670)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003625D3D
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:EPX83779.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
tripartite ATP-independent periplasmic transporter, DctQ component family protein
BSR_inoc_2_25165_13
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13733..14710)
DNA (978bp) protein (326aa)
C4-dicarboxylate ABC transporter n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037037B0
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KJE33894.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
C4-dicarboxylate transport system, substrate-binding protein
BSR_inoc_2_25165_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14733..15464)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036834DB
Transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEH82797.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
BSR_inoc_2_25165_15
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15657..16880
DNA (1224bp) protein (408aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036138C6
mannonate dehydratase
BSR_inoc_2_25165_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16970..17407
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003632366
hypothetical protein
SNARE associated Golgi protein-like protein {ECO:0000313|EMBL:ADH87936.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
BSR_inoc_2_25165_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17368..18381)
DNA (1014bp) protein (338aa)
bactoprenol glucosyl transferase n=1 Tax=Pannonibacter phragmitetus RepID=UPI000376DA1C
WcaA protein {ECO:0000313|EMBL:BAQ49150.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
glycosyl transferase family protein
BSR_inoc_2_25165_18
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18500..19378
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003789999
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIB13853.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
BSR_inoc_2_25165_19
unknown

Not on your lists

comp(19396..20154)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003757037
BSR_inoc_2_25165_20
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20325..21266
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003758698
Transcriptional regulator {ECO:0000313|EMBL:EPX83196.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
LysR family transcriptional regulator
BSR_inoc_2_25165_21
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21398..22390
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000364700F
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
BSR_inoc_2_25165_22
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22601..23104
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000366285A
Tricarboxylate transport protein TctB {ECO:0000313|EMBL:EPX75827.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
hypothetical protein
BSR_inoc_2_25165_23
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23118..24611
DNA (1494bp) protein (498aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037ACB12
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
BSR_inoc_2_25165_24
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24618..25484
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003723DE1
Shikimate dehydrogenase substrate binding domain-containing protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
BSR_inoc_2_25165_25
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25489..27402
DNA (1914bp) protein (638aa)
4-hydroxyphenylpyruvate dioxygenase protein (EC:1.13.11.27)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000363DB7A
Tax=GWF1_Rhodobacteraceae_65_7_curated
BSR_inoc_2_25165_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27499..27849
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXA3_9RHIZ
Phage-liked protein {ECO:0000313|EMBL:EYR82785.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
BSR_inoc_2_25165_27
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27846..28139
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RWD7_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI74806.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
BSR_inoc_2_25165_trna_3
unknown

Not on your lists

comp(28270..28341)
DNA (72bp)
transferRNA Thr
BSR_inoc_2_25165_28
unknown

Not on your lists

28580..28783
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037A376B
BSR_inoc_2_25165_29
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28968..30257
DNA (1290bp) protein (430aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036598B8
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1
Displaying items 1-30 of 460 in total

View Taxonomy