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BSR_Lac_UAPBR_middle_p_58989

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_Lac_UAPBR_middle_p_58989_1
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..130)
DNA (129bp) protein (43aa)
Transcriptional regulator n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L1H2_9GAMM
LacI family transcription regulator
Transcriptional regulator {ECO:0000313|EMBL:EGG29823.1}; TaxID=876044 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium IMCC3088.;"
BSR_Lac_UAPBR_middle_p_58989_2
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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232..1101
DNA (870bp) protein (290aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R7B8_SPISS
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ADK82623.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
BSR_Lac_UAPBR_middle_p_58989_3
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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1143..1991
DNA (849bp) protein (283aa)
polyamine ABC transporter permease n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036DFE49
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADK82622.1}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
BSR_Lac_UAPBR_middle_p_58989_4
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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2041..3012
DNA (972bp) protein (324aa)
ABC transporter (EC:3.6.3.25)
ABC transporter related protein {ECO:0000313|EMBL:ADK82621.1}; EC=3.6.3.25 {ECO:0000313|EMBL:ADK82621.1};; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
ABC transporter n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI0003685D0E
BSR_Lac_UAPBR_middle_p_58989_5
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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3064..4224
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00037B9D0D
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADK82620.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
BSR_Lac_UAPBR_middle_p_58989_6
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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4307..5170
DNA (864bp) protein (288aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R7B4_SPISS
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADK82619.1}; Flags: Precursor;; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
BSR_Lac_UAPBR_middle_p_58989_7
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5229..6005)
DNA (777bp) protein (259aa)
ATPase component of uncharacterized ABC-type transporter n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XX41_9FIRM
Heme ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGK92068.1}; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
ABC transporter ATPase
BSR_Lac_UAPBR_middle_p_58989_8
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6103..7107)
DNA (1005bp) protein (335aa)
Putative ABC-type transport system, periplasmic component/surface lipoprotein n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WHN5_DESOD
ABC-type transport system, periplasmic component/surface lipoprotein
Putative ABC-type transport system, periplasmic component/surface lipoprotein {ECO:0000313|EMBL:AET69597.1}; Flags: Precursor;; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
BSR_Lac_UAPBR_middle_p_58989_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7129..8574)
DNA (1446bp) protein (482aa)
Hydroxyatrazine ethylaminohydrolase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEV6_9FIRM
Hydroxyatrazine ethylaminohydrolase {ECO:0000313|EMBL:EGJ45976.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
cytosine deaminase
BSR_Lac_UAPBR_middle_p_58989_10
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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8835..9893
DNA (1059bp) protein (353aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5I9W8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61857.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
sugar isomerase
BSR_Lac_UAPBR_middle_p_58989_11
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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9910..10881
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5I9W9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61858.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase
BSR_Lac_UAPBR_middle_p_58989_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10899..12059
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI000378EF92
Uncharacterized protein {ECO:0000313|EMBL:EHL74144.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
putative xylose repressor
BSR_Lac_UAPBR_middle_p_58989_13

Not on your lists

12132..12983
DNA (852bp) protein (284aa)
LmbE family protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPJ0_ROSCS
Uncharacterized protein {ECO:0000313|EMBL:KKM05505.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LmbE family protein
BSR_Lac_UAPBR_middle_p_58989_14
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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13086..13679
DNA (594bp) protein (198aa)
Chromate transport protein ChrA n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QUZ0_SPHPG
chromate transport protein ChrA
Chromate transport protein ChrA {ECO:0000313|EMBL:AEV28166.1}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
BSR_Lac_UAPBR_middle_p_58989_15
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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13673..14254
DNA (582bp) protein (194aa)
Chromate transport protein ChrA n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QUZ1_SPHPG
chromate transport protein ChrA
Chromate transport protein ChrA {ECO:0000313|EMBL:AEV28167.1}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
BSR_Lac_UAPBR_middle_p_58989_16
unknown

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14417..14521
DNA (105bp) protein (35aa)

This feature has no annotations

BSR_Lac_UAPBR_middle_p_58989_17
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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14683..15711
DNA (1029bp) protein (343aa)
Transcriptional regulator, LacI family n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RXY8_SPHGB
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADY12412.1}; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
BSR_Lac_UAPBR_middle_p_58989_18
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16059..16877
DNA (819bp) protein (273aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Phosphofructokinase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVC2_9FIRM
phosphofructokinase
BSR_Lac_UAPBR_middle_p_58989_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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16913..17731
DNA (819bp) protein (273aa)
glucosamine-6-phosphate deaminase (EC:3.5.99.6)
Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWP3_9FIRM
Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase {ECO:0000313|EMBL:EHM38523.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
BSR_Lac_UAPBR_middle_p_58989_20
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17728..18138
DNA (411bp) protein (137aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
UPI0003CE09CC related cluster n=1 Tax=unknown RepID=UPI0003CE09CC
BSR_Lac_UAPBR_middle_p_58989_21
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(18232..19308)
DNA (1077bp) protein (359aa)
Transcriptional regulator n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QYR5_SPHPG
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEV29692.1}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
BSR_Lac_UAPBR_middle_p_58989_22
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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19581..20867
DNA (1287bp) protein (429aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QYR4_SPHPG
3-phosphoshikimate 1-carboxyvinyltransferase
BSR_Lac_UAPBR_middle_p_58989_23
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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20881..21885
DNA (1005bp) protein (335aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QYR3_SPHPG
TRAP transporter solute receptor, TAXI family
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:AEV29690.1}; Flags: Precursor;; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
BSR_Lac_UAPBR_middle_p_58989_24
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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21964..23880
DNA (1917bp) protein (639aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QYR2_SPHPG
TRAP transporter, 4TM/12TM fusion protein
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:AEV29689.1}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
BSR_Lac_UAPBR_middle_p_58989_25
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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24066..24896
DNA (831bp) protein (277aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
Undecaprenyl-diphosphatase n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QQM1_SPHPG
undecaprenyl-diphosphatase UppP
BSR_Lac_UAPBR_middle_p_58989_26
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25026..26390)
DNA (1365bp) protein (455aa)
Radical SAM protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I617_9CLOT
Radical SAM protein {ECO:0000313|EMBL:ETA80624.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
radical SAM protein
BSR_Lac_UAPBR_middle_p_58989_27
unknown

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comp(26425..26559)
DNA (135bp) protein (45aa)

This feature has no annotations

BSR_Lac_UAPBR_middle_p_58989_28
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26814..27974)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0L7N9_MAGSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK43982.1}; TaxID=156889 species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1).;"
BSR_Lac_UAPBR_middle_p_58989_29
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28276..29577)
DNA (1302bp) protein (434aa)
Transporter, major facilitator family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5I9_9CLOT
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEG72373.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
BSR_Lac_UAPBR_middle_p_58989_30
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(29816..31060)
DNA (1245bp) protein (415aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=158190 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
DNA polymerase IV n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QQM8_SPHPG
nucleotidyltransferase/DNA polymerase involved in DNA repair
Displaying items 1-30 of 62 in total

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