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BSR_Lac_UAPBR_inlet_at_2_74525

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_Lac_UAPBR_inlet_at_2_74525_1
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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46..2247
-----------------
DNA (2202bp)
protein (734aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IKS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57860.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Predicted exporters of the RND superfamily
BSR_Lac_UAPBR_inlet_at_2_74525_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2252..4168
-----------------
DNA (1917bp)
protein (639aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5FYG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY10095.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
hypothetical protein
BSR_Lac_UAPBR_inlet_at_2_74525_3
unknown

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4203..4751
-----------------
DNA (549bp)
protein (183aa)

This feature has no annotations

BSR_Lac_UAPBR_inlet_at_2_74525_4
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5029..6588
-----------------
DNA (1560bp)
protein (520aa)
ABC transporter substrate-binding protein family 5 n=1 Tax=Clostridium sp. CAG:242 RepID=R6D214_9CLOT
ABC transporter substrate-binding protein family 5 {ECO:0000313|EMBL:CDA79129.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC-type oligopeptide transport system, periplasmic component
BSR_Lac_UAPBR_inlet_at_2_74525_5
unknown

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comp(6592..6753)
-----------------
DNA (162bp)
protein (54aa)

This feature has no annotations

BSR_Lac_UAPBR_inlet_at_2_74525_6
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6896..7084)
-----------------
DNA (189bp)
protein (63aa)
50S ribosomal protein L28 n=1 Tax=Clostridium sp. CAG:169 RepID=R6BDU0_9CLOT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
rpmB; ribosomal protein L28
BSR_Lac_UAPBR_inlet_at_2_74525_7
unknown

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comp(7175..7579)
-----------------
DNA (405bp)
protein (135aa)

This feature has no annotations

BSR_Lac_UAPBR_inlet_at_2_74525_trna_1
unknown

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7327..7400
-----------------
DNA (74bp)
transferRNA Arg
BSR_Lac_UAPBR_inlet_at_2_74525_8
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7712..11149)
-----------------
DNA (3438bp)
protein (1146aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
mfd; Transcription-repair-coupling factor (EC:3.6.4.-)
Transcription-repair-coupling factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG14_9FIRM
BSR_Lac_UAPBR_inlet_at_2_74525_9
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11146..11781)
-----------------
DNA (636bp)
protein (212aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP20_9CLOT
BSR_Lac_UAPBR_inlet_at_2_74525_10
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11904..12866)
-----------------
DNA (963bp)
protein (321aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E923_9CLOT
BSR_Lac_UAPBR_inlet_at_2_74525_11
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12985..14364)
-----------------
DNA (1380bp)
protein (460aa)
Bifunctional protein GlmU n=1 Tax=Clostridium sp. CAG:242 RepID=R6D5N1_9CLOT
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
UDP-N-acetylglucosamine pyrophosphorylase
BSR_Lac_UAPBR_inlet_at_2_74525_12
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14480..15610)
-----------------
DNA (1131bp)
protein (377aa)
Cell cycle protein FtsW/RodA/SpoVE family n=1 Tax=Clostridium sp. CAG:169 RepID=R6B9V7_9CLOT
Cell cycle protein FtsW/RodA/SpoVE family {ECO:0000313|EMBL:CDA60958.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Bacterial cell division membrane protein
BSR_Lac_UAPBR_inlet_at_2_74525_13
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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15948..16364
-----------------
DNA (417bp)
protein (139aa)
Hydrolase, P-loop family n=2 Tax=Oscillibacter RepID=U2R4A3_9FIRM
Hydrolase, P-loop family {ECO:0000313|EMBL:ERK65356.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
BSR_Lac_UAPBR_inlet_at_2_74525_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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16361..17053
-----------------
DNA (693bp)
protein (231aa)
tRNA threonylcarbamoyl adenosine modification protein YeaZ n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YI82_9FIRM
tRNA threonylcarbamoyl adenosine modification protein YeaZ {ECO:0000313|EMBL:CDD31104.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
BSR_Lac_UAPBR_inlet_at_2_74525_15
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17050..17499
-----------------
DNA (450bp)
protein (150aa)
rpiB; K01808 ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DQC3_CLOS4
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:ERI98663.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
BSR_Lac_UAPBR_inlet_at_2_74525_16
Fretibacterium fastidiosum, Fretibacterium, Synergistales, Synergistia, Synergistetes, Bacteria

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17502..18227
-----------------
DNA (726bp)
protein (242aa)
Sulfite exporter TauE/SafE n=1 Tax=Fretibacterium fastidiosum RepID=D4M716_9BACT
Sulfite exporter TauE/SafE.
Sulfite exporter TauE/SafE {ECO:0000313|EMBL:CBL27661.1}; TaxID=651822 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Fretibacterium.;" source="Fretibacterium fastidiosum.;"
BSR_Lac_UAPBR_inlet_at_2_74525_17
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18294..18923
-----------------
DNA (630bp)
protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
upp; Uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=2 Tax=Anaerotruncus sp. G3(2012) RepID=R9LAH2_9FIRM
BSR_Lac_UAPBR_inlet_at_2_74525_18
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18975..20165
-----------------
DNA (1191bp)
protein (397aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCF1_9FIRM
BSR_Lac_UAPBR_inlet_at_2_74525_19
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20183..20956
-----------------
DNA (774bp)
protein (258aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
tpiA; Triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAW8_9CLOT
BSR_Lac_UAPBR_inlet_at_2_74525_20
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21010..22518
-----------------
DNA (1509bp)
protein (503aa)
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NIR7_9CLOT
BSR_Lac_UAPBR_inlet_at_2_74525_21
unknown

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22624..22845
-----------------
DNA (222bp)
protein (74aa)

This feature has no annotations

Displaying 22 items

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