ggKbase home page

BSR_Lac_UAPBR_middle_p_1_42025

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_Lac_UAPBR_middle_p_1_42025_1
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1399
DNA (1398bp) protein (466aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Threonine--tRNA ligase n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=SYT_THETN
BSR_Lac_UAPBR_middle_p_1_42025_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1432..3786)
DNA (2355bp) protein (785aa)
formate acetyltransferase (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Clostridium botulinum (strain 657 / Type Ba4) RepID=C3KU28_CLOB6
Putative formate acetyltransferase {ECO:0000313|EMBL:BAQ14839.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
BSR_Lac_UAPBR_middle_p_1_42025_3
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3788..4462)
DNA (675bp) protein (225aa)
Glycyl-radical enzyme activating protein family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPT8_9CLOT
Pyruvate-formate lyase-activating enzyme {ECO:0000313|EMBL:KIE45249.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
glycyl-radical enzyme activating protein family
BSR_Lac_UAPBR_middle_p_1_42025_4
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4659..5243)
DNA (585bp) protein (195aa)
Transcriptional regulator, XRE family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPT7_9CLOT
transcriptional regulator, XRE family
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AKA67989.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
BSR_Lac_UAPBR_middle_p_1_42025_5
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5818..6495
DNA (678bp) protein (226aa)
VTC domain n=2 Tax=Clostridium cellulovorans RepID=D9SW88_CLOC7
VTC domain-containing protein
VTC domain {ECO:0000313|EMBL:ADL51232.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
BSR_Lac_UAPBR_middle_p_1_42025_6
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6525..7253
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QHL9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY27509.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
twin-arginine translocating C-subunit
BSR_Lac_UAPBR_middle_p_1_42025_7
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

7283..9235
DNA (1953bp) protein (651aa)
CotH protein n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KJ49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CEO87694.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
CotH protein
BSR_Lac_UAPBR_middle_p_1_42025_8
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

9412..11292
DNA (1881bp) protein (627aa)
Methyl-accepting chemotaxis protein n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J5Z9_MARPK
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AEX86218.1}; Flags: Precursor;; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
BSR_Lac_UAPBR_middle_p_1_42025_9
Thermotoga naphthophila, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists


comp(11353..11943)
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=590168 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 /; RKU-10).;"
Non-canonical purine NTP pyrophosphatase n=6 Tax=Thermotoga RepID=NTPA_THEMA
ham1 protein
BSR_Lac_UAPBR_middle_p_1_42025_10
Defluviitoga tunisiensis, Defluviitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(11940..12587)
DNA (648bp) protein (216aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:CEP78661.1}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461, ECO:0000313|EMBL:CEP78661.1};; TaxID=1006576 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Defluviitoga.;" source="Defluviitoga tunisiensis.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BIC3_PETMO
BSR_Lac_UAPBR_middle_p_1_42025_11
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(12581..13483)
DNA (903bp) protein (301aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J6V8_MARPK
ribosome small subunit-dependent GTPase A
BSR_Lac_UAPBR_middle_p_1_42025_12
Defluviitoga tunisiensis, Defluviitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13487..13984)
DNA (498bp) protein (166aa)
PASTA domain containing protein n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BIC1_PETMO
PASTA domain-containing protein {ECO:0000313|EMBL:CEP78659.1}; TaxID=1006576 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Defluviitoga.;" source="Defluviitoga tunisiensis.;"
PASTA domain-containing protein
BSR_Lac_UAPBR_middle_p_1_42025_13
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13965..15029)
DNA (1065bp) protein (355aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Flags: Precursor;; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J6W0_MARPK
2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD
BSR_Lac_UAPBR_middle_p_1_42025_14
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(15022..16323)
DNA (1302bp) protein (434aa)
tRNA/rRNA cytosine-C5-methylase n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J6K5_MARPK
tRNA/rRNA cytosine-C5-methylase
tRNA/rRNA cytosine-C5-methylase {ECO:0000313|EMBL:AEX85190.1}; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
BSR_Lac_UAPBR_middle_p_1_42025_15
Defluviitoga tunisiensis, Defluviitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(16325..17011)
DNA (687bp) protein (229aa)
Peptidase membrane zinc metallopeptidase putative n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BHQ0_PETMO
Peptidase membrane zinc metallopeptidase putative {ECO:0000313|EMBL:CEP78657.1}; TaxID=1006576 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Defluviitoga.;" source="Defluviitoga tunisiensis.;"
peptidase membrane zinc metallopeptidase putative
BSR_Lac_UAPBR_middle_p_1_42025_16
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(17047..18228)
DNA (1182bp) protein (394aa)
Putative SAM-dependent methyltransferase n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J3X2_MARPK
SAM-dependent methyltransferase
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:AEX84700.1}; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
BSR_Lac_UAPBR_middle_p_1_42025_17
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(18225..19346)
DNA (1122bp) protein (374aa)
Alcohol dehydrogenase, class IV n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J7Y5_MARPK
alcohol dehydrogenase
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:AEX85476.1}; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
BSR_Lac_UAPBR_middle_p_1_42025_18
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19481..20578
DNA (1098bp) protein (366aa)
GTP-binding protein YchF n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B61834
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
engD; GTPase with RNA binding site
BSR_Lac_UAPBR_middle_p_1_42025_19
Defluviitoga tunisiensis, Defluviitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

20583..21905
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BER8_PETMO
UPF0348 protein DTL3_0935 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1006576 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Defluviitoga.;" source="Defluviitoga tunisiensis.;"
hypothetical protein
BSR_Lac_UAPBR_middle_p_1_42025_20
Defluviitoga tunisiensis, Defluviitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

21883..23406
DNA (1524bp) protein (508aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1006576 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Defluviitoga.;" source="Defluviitoga tunisiensis.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J5B7_MARPK
GMP synthase
BSR_Lac_UAPBR_middle_p_1_42025_21
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23590..23724
DNA (135bp) protein (45aa)
Group II intron reverse transcriptase/maturase {ECO:0000313|EMBL:ETJ99327.1}; EC=2.7.7.49 {ECO:0000313|EMBL:ETJ99327.1};; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
Group II intron maturase-specific domain protein n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G6N0_9FIRM
GBSi1, group II intron, maturase
Displaying 21 items

View Taxonomy