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BSR_Ace_UAPBR_inlet_at_60489

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_Ace_UAPBR_inlet_at_60489_1
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

2..589
DNA (588bp) protein (196aa)
Seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
Serine--tRNA ligase n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F068_SPICH
BSR_Ace_UAPBR_inlet_at_60489_2
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(612..2558)
DNA (1947bp) protein (649aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003722101
glycoside hydrolase
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
BSR_Ace_UAPBR_inlet_at_60489_3
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(2555..3088)
DNA (534bp) protein (178aa)
Transcription elongation factor GreA id=3780009 bin=GWB1_Spirochaetes_59_5 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
greB; transcription elongation factor greb
Tax=GWB1_Spirochaetes_59_5_curated
BSR_Ace_UAPBR_inlet_at_60489_4
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(3132..3599)
DNA (468bp) protein (156aa)
Putative uncharacterized protein id=3219703 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
BSR_Ace_UAPBR_inlet_at_60489_5
unknown

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comp(3592..3816)
DNA (225bp) protein (75aa)

This feature has no annotations

BSR_Ace_UAPBR_inlet_at_60489_6
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

comp(3813..4181)
DNA (369bp) protein (123aa)
UPF0102 protein Spica_0481 n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8EZZ2_SPICH
hypothetical protein
Tax=GWC1_Treponema_61_84_curated
BSR_Ace_UAPBR_inlet_at_60489_7
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


comp(4279..4668)
DNA (390bp) protein (130aa)
50S ribosomal protein L19 n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8EZZ6_SPICH
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
BSR_Ace_UAPBR_inlet_at_60489_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(4625..5407)
DNA (783bp) protein (261aa)
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase id=3219841 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
BSR_Ace_UAPBR_inlet_at_60489_9
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(5392..5925)
DNA (534bp) protein (178aa)
Ribosome maturation factor RimM id=3219843 bin=GWB1_Spirochaetes_59_5 species=Treponema denticola genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
ribosome maturation factor rimM
Tax=GWB1_Spirochaetes_59_5_curated
BSR_Ace_UAPBR_inlet_at_60489_10
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(5933..6166)
DNA (234bp) protein (78aa)
UPF0109 protein Spirs_1873 n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R6I1_SPISS
R-binding protein (contains KH domain)
UPF0109 protein Spirs_1873 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
BSR_Ace_UAPBR_inlet_at_60489_11
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


comp(6245..6496)
DNA (252bp) protein (84aa)
30S ribosomal protein S16 id=3219847 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
BSR_Ace_UAPBR_inlet_at_60489_12
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

6650..7708
DNA (1059bp) protein (353aa)
putative dihydrouridine synthase id=3013944 bin=GWF1_Spirochaetes_60_12 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
dihydrouridine synthase
Tax=GWB1_Spirochaetes_60_80_curated
BSR_Ace_UAPBR_inlet_at_60489_13
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

7767..9680
DNA (1914bp) protein (638aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Long-chain-fatty-acid--CoA ligase id=3219851 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
BSR_Ace_UAPBR_inlet_at_60489_14
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9731..10606)
DNA (876bp) protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:GAK42738.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
hypothetical protein id=718145 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
BSR_Ace_UAPBR_inlet_at_60489_15
unknown

Not on your lists

10766..11434
DNA (669bp) protein (223aa)

This feature has no annotations

BSR_Ace_UAPBR_inlet_at_60489_16
GWC2_Clostridiales_40_7_curated, Clostridiales, Bacteria

Not on your lists

11437..11772
DNA (336bp) protein (112aa)
Transcriptional regulator, MarR family id=4549278 bin=GWC2_Clostridiales_40_7 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
regulatory protein ArsR
Tax=GWC2_Clostridiales_40_7_curated
BSR_Ace_UAPBR_inlet_at_60489_17
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

11776..12468
DNA (693bp) protein (231aa)
ABC-type antimicrobial peptide transport system, ATPase component id=3268433 bin=GWA1_Treponema_62_8 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
ABC-type antimicrobial peptide transport system, ATPase component
Tax=GWC1_Treponema_61_84_curated
BSR_Ace_UAPBR_inlet_at_60489_18
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

12465..13727
DNA (1263bp) protein (421aa)
Putative permease, involved in lipoprotein release id=3268432 bin=GWA1_Treponema_62_8 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
lipoprotein release ABC transporter permease
Tax=GWC1_Treponema_61_84_curated
BSR_Ace_UAPBR_inlet_at_60489_19
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

13739..14995
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=unclassified candidate division KSB1 RepID=UPI00036D3AA5
ABC-type transport system, involved in lipoprotein release, permease component
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
BSR_Ace_UAPBR_inlet_at_60489_20
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

15019..15780
DNA (762bp) protein (254aa)
Putative sigma E regulatory protein, MucB/RseB id=3268430 bin=GWA1_Treponema_62_8 species=Halanaerobium saccharolyticum genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
putative sigma E regulatory protein, MucB/RseB
Tax=GWC1_Treponema_61_84_curated
BSR_Ace_UAPBR_inlet_at_60489_21
unknown

Not on your lists

15777..16874
DNA (1098bp) protein (366aa)

This feature has no annotations

BSR_Ace_UAPBR_inlet_at_60489_22
Treponema caldarium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

16983..20138
DNA (3156bp) protein (1052aa)
Isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;"
Isoleucine--tRNA ligase n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F0I3_SPICH
BSR_Ace_UAPBR_inlet_at_60489_23
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

20513..22207
DNA (1695bp) protein (565aa)
Putative uncharacterized protein id=3829744 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=GWB1_Spirochaetes_59_5_curated
Displaying 23 items

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