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RifSed_csp2_16ft_3_scaffold_12182

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_12182_1
unknown

Not on your lists

567..788
DNA (222bp) protein (74aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_2
R_OD1_Falkowbacteria_56_16, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

863..1942
DNA (1080bp) protein (360aa)
Putative uncharacterized protein bin=GWA2_OP3_52_12 species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_56_16_curated
RifSed_csp2_16ft_3_scaffold_12182_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

2010..3014
DNA (1005bp) protein (335aa)
DNA primase large subunit PriL Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=PRIL_METAC
DNA primase large subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_12182_4
Pyrobaculum arsenaticum, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

3219..3842
DNA (624bp) protein (208aa)
DNA primase small subunit PriS {ECO:0000255|HAMAP-Rule:MF_00700}; EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00700};; species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321).;"
DNA primase small subunit PriS Tax=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) RepID=PRIS_PYRAR
DNA primase, small subunit
RifSed_csp2_16ft_3_scaffold_12182_5
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(4074..4550)
DNA (477bp) protein (159aa)
Tax=RBG_16_OP11_Levybacteria_35_11_curated
RifSed_csp2_16ft_3_scaffold_12182_6
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(4599..5381)
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Halococcus thailandensis JCM 13552 RepID=M0NE56_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82376.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
RifSed_csp2_16ft_3_scaffold_12182_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5378..6094)
DNA (717bp) protein (239aa)
Putative transcriptional regulator Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM67_NITGG
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFU57604.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
RifSed_csp2_16ft_3_scaffold_12182_8
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

6578..6985
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S374_FERPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC64707.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Ferroglobus.;" source="Ferroglobus placidus (strain DSM 10642 / AEDII12DO).;"
RifSed_csp2_16ft_3_scaffold_12182_9
unknown

Not on your lists

6989..7354
DNA (366bp) protein (122aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_10
unknown

Not on your lists

7365..8012
DNA (648bp) protein (216aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_11
unknown

Not on your lists

8002..8373
DNA (372bp) protein (124aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

8457..8681
DNA (225bp) protein (75aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_12182_13
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8682..9176
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQ15_METH6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AET65046.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
RifSed_csp2_16ft_3_scaffold_12182_14
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

Not on your lists

comp(9428..9763)
DNA (336bp) protein (112aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036247C8
hypothetical protein
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
RifSed_csp2_16ft_3_scaffold_12182_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(9778..10287)
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Clostridium sartagoforme AAU1 RepID=R9CDX4_9CLOT
protein translocase subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_12182_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10620..11306
DNA (687bp) protein (229aa)
UPF0758 protein Mbar_A2303 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Y2303_METBF
DNA replication and repair protein RadC {ECO:0000313|EMBL:KCZ72187.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA repair protein RadC
RifSed_csp2_16ft_3_scaffold_12182_17
unknown

Not on your lists

11303..11503
DNA (201bp) protein (67aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_18
Desulfosporosinus sp. OT, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11500..11901
DNA (402bp) protein (134aa)
Putative uncharacterized protein Tax=Desulfosporosinus sp. OT RepID=G2FLL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGW41448.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. OT.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_12182_19
unknown

Not on your lists

11903..12178
DNA (276bp) protein (92aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_20
unknown

Not on your lists

12289..12501
DNA (213bp) protein (71aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_12182_21
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12593..13534
DNA (942bp) protein (314aa)
Nucleic acid-binding OB-fold tRNA/helicase-type protein Tax=Methanolobus psychrophilus R15 RepID=K4MDF3_9EURY
nucleic acid-binding OB-fold tRNA/helicase-type protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_12182_22
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13537..14415
DNA (879bp) protein (293aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TLL8_METAC
Uncharacterized protein {ECO:0000313|EMBL:AKB77684.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_12182_23
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14422..14601
DNA (180bp) protein (60aa)
Putative uncharacterized protein bin=GWC2_Syntrophobacterales_56_13 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
cytoplasmic protein
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
RifSed_csp2_16ft_3_scaffold_12182_24
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15019..15432
DNA (414bp) protein (138aa)
Transposase, IS116/IS110/IS902 family Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BW46_METCG
transposase, IS116/IS110/IS902 family
Transposase, IS116/IS110/IS902 family {ECO:0000313|EMBL:AEB68691.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
RifSed_csp2_16ft_3_scaffold_12182_25
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15440..16267
DNA (828bp) protein (276aa)
Transposase, IS116/IS110/IS902 family Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZ39_METCG
transposase, IS116/IS110/IS902 family
Transposase, IS116/IS110/IS902 family {ECO:0000313|EMBL:AEB67738.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
Displaying 25 items

View Taxonomy