ggKbase home page

RifSed_csp2_16ft_3_scaffold_3623

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_3623_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3..422)
DNA (420bp) protein (140aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000371D034
VIT family protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp2_16ft_3_scaffold_3623_2
unknown

Not on your lists

685..888
DNA (204bp) protein (68aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_3623_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(941..1204)
DNA (264bp) protein (88aa)
UPF0248 protein Mfer_1226 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWU3_METFV
Uncharacterized protein {ECO:0000313|EMBL:KCZ72407.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3623_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1205..2017)
DNA (813bp) protein (271aa)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Quinolinate phosphoribosyltransferase (decarboxylating) (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] Tax=Methanosarcina mazei RepID=M1Q597_METMZ
RifSed_csp2_16ft_3_scaffold_3623_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2084..2896
DNA (813bp) protein (271aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable L-aspartate dehydrogenase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KX10_METHD
aspartate dehydrogenase
RifSed_csp2_16ft_3_scaffold_3623_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2898..3776
DNA (879bp) protein (293aa)
Sec-independent protein translocase, protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q469I3_METBF
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
sec-independent protein translocase, protein
RifSed_csp2_16ft_3_scaffold_3623_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(3779..4483)
DNA (705bp) protein (235aa)
zinc/iron permease bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin3_NC10 organism_group=NC10
putative Zinc/iron permease
Tax=CSP1_5_NC10
RifSed_csp2_16ft_3_scaffold_3623_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4480..6180)
DNA (1701bp) protein (567aa)
Putative membrane-associated Zn-dependent protease Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZ23_METHD
Putative membrane-associated Zn-dependent protease {ECO:0000313|EMBL:KCZ72602.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative membrane-associated Zn-dependent protease
RifSed_csp2_16ft_3_scaffold_3623_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6251..6559
DNA (309bp) protein (103aa)
CutA1 divalent ion tolerance protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQG5_ARCVS
Uncharacterized protein {ECO:0000313|EMBL:KCZ72601.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
CutA1 divalent ion tolerance protein
RifSed_csp2_16ft_3_scaffold_3623_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6552..7112
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Thermofilum sp. 1910b RepID=S5Z8N7_9CREN
Conserved protein of DIM6/NTAB family {ECO:0000313|EMBL:KCZ72600.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3623_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7128..7463)
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BTE4_METCG
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3623_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


7774..9783
DNA (2010bp) protein (670aa)
UPI0003D1BF9C related cluster Tax=unknown RepID=UPI0003D1BF9C
methionyl-tRNA synthetase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3623_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(9784..10632)
DNA (849bp) protein (283aa)
Ribose-phosphate pyrophosphokinase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KUV7_METHD
ribose-phosphate pyrophosphokinase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3623_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10854..12482
DNA (1629bp) protein (543aa)
ABC transporter, ATP-binding protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46EK7_METBF
Methyl coenzyme M reductase system, component A2 {ECO:0000313|EMBL:KCZ72689.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Methyl coenzyme M reductase system component A2
RifSed_csp2_16ft_3_scaffold_3623_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12507..14024
DNA (1518bp) protein (506aa)
UPF0288 protein MA_3997 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y3997_METAC
UPF0288 protein ANME2D_01119 {ECO:0000256|HAMAP-Rule:MF_01089}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3623_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14021..14452
DNA (432bp) protein (144aa)
Methanogenesis marker protein 6 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XME1_METZD
Putative methanogenesis marker protein 6 {ECO:0000313|EMBL:KCZ72687.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methanogenesis marker protein 6
RifSed_csp2_16ft_3_scaffold_3623_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

14449..14901
DNA (453bp) protein (151aa)
Methanogenesis marker protein 5 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBD5_METEZ
methanogenesis marker protein 5
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3623_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14898..16142
DNA (1245bp) protein (415aa)
BadF/BadG/BcrA/BcrD ATPase family protein Tax=Methanosarcina mazei RepID=M1Q833_METMZ
Putative methanogenesis marker protein 15 {ECO:0000313|EMBL:KCZ72685.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
BadF/BadG/BcrA/BcrD ATPase family protein
RifSed_csp2_16ft_3_scaffold_3623_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

16144..16749
DNA (606bp) protein (202aa)
Methanogenesis marker protein 17 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBD7_METEZ
methanogenesis marker protein 17
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3623_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16742..17668
DNA (927bp) protein (309aa)
Uncharacterized protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8W5_UNCMA
Putative methanogenesis marker protein 7 {ECO:0000313|EMBL:KCZ72683.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3623_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17685..18941
DNA (1257bp) protein (419aa)
Glutamyl-tRNA(Gln) amidotransferase subunit D {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457}; Short=Glu-ADT subunit D {ECO:0000256|HAMAP-Rule:MF_00586};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00586, ECO:0000256|RuleBase:RU004457};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Glutamyl-tRNA(Gln) amidotransferase subunit D Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B7W3_METTP
glutamyl-tRNA(Gln) amidotransferase subunit D
RifSed_csp2_16ft_3_scaffold_3623_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19138..19566)
DNA (429bp) protein (143aa)
Probable cyclic pyranopterin monophosphate synthase accessory protein Tax=Methanolobus psychrophilus R15 RepID=K4MEJ8_9EURY
Probable cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative molybdenum cofactor biosynthesis protein C
RifSed_csp2_16ft_3_scaffold_3623_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19606..21036)
DNA (1431bp) protein (477aa)
Carbohydrate kinase, YjeF related protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKH3_METZD
YjeF-like protein, hydroxyethylthiazole kinase-related {ECO:0000313|EMBL:KCZ73267.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
carbohydrate kinase, YjeF
RifSed_csp2_16ft_3_scaffold_3623_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21205..21789
DNA (585bp) protein (195aa)
Holliday junction DNA helicase subunit RuvA {ECO:0000313|EMBL:KCZ73525.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KCZ73525.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Holliday junction DNA helicase RuvA Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LKI0_METBM
ruvA; holliday junction DNA helicase RuvA
RifSed_csp2_16ft_3_scaffold_3623_25
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

21793..22788
DNA (996bp) protein (332aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB Tax=Methanofollis liminatans DSM 4140 RepID=J0S854_9EURY
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_3623_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22814..25489)
DNA (2676bp) protein (892aa)
Uncharacterized protein Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TUJ9_METAC
S-layer-related duplication domain {ECO:0000313|EMBL:KCZ71943.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_3623_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25608..26231)
DNA (624bp) protein (208aa)
Translation initiation factor 6 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B9G3_METTP
Translation initiation factor 6 {ECO:0000256|HAMAP-Rule:MF_00032}; Short=aIF-6 {ECO:0000256|HAMAP-Rule:MF_00032};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation initiation factor IF-6
RifSed_csp2_16ft_3_scaffold_3623_28
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(26286..26549)
DNA (264bp) protein (88aa)
UPI0003D1A303 related cluster Tax=unknown RepID=UPI0003D1A303
50S ribosomal protein L31e
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_3623_29
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26562..26714)
DNA (153bp) protein (51aa)
50S ribosomal protein L39e Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=RL39_METBU
rpl39e; 50S ribosomal protein L39e
50S ribosomal protein L39e {ECO:0000255|HAMAP-Rule:MF_00629}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 /; ACE-M).;"
RifSed_csp2_16ft_3_scaffold_3623_30
unknown

Not on your lists

comp(26794..26931)
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 30 items

View Taxonomy