ggKbase home page

RifSed_csp2_16ft_3_scaffold_6648_7

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: 5576..6115

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.5
  • Coverage: 178.0
  • Bit_score: 265
  • Evalue 3.10e-68
tRNA nucleotidyltransferase Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVY5_METMA similarity UNIREF
DB: UNIREF100
  • Identity: 55.0
  • Coverage: 180.0
  • Bit_score: 189
  • Evalue 2.00e-45
tRNA nucleotidyltransferase similarity KEGG
DB: KEGG
  • Identity: 55.0
  • Coverage: 180.0
  • Bit_score: 189
  • Evalue 5.70e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 540
ATGATCCGGACATTCATAGCTGTGGAATTACCTGAAAAATTCATTCCTGAAATAGAAAAAATGAGCTCTTTGCTCAGAGCCCCCGGGATCAAGCCTGTGGATCCGGGGCTGGTGCACATCACCATGAAGTTTCTGGGAGACATACCTGAAGATAAAGTAGAACCCATTGCTTCGGCTTTGTCGCGGATCAACTGCACACCGTTTGAAGCAAGGATCAGGGGAGCAGGTGTTTTCCCAAAGCTGAGTTATATCAAAGTAATCTGGCTTGGAGCACAGGGGGACTTTGATACCTTGCATAGGGAAATAGAACGTGTGCTTTCACCTTTTGGATTTGAAAAAGAGCGCCAATTTACTCCTCATGCCACACTTGCACGGGTTAAACAGCTCAGTGAAAAGGCAGGACTTCTTGAAAAAGTAAAAAAAATAGAAAATATTGATCTGGGAGCGATGAAAGTTGAGGCTATAAGCCTGAAGAAAAGCACGCTTACGCCCAGGGGTCCTGTGTACGAGACATTAAGGGAAATAAAACTGAAAAGTTGA
PROTEIN sequence
Length: 180
MIRTFIAVELPEKFIPEIEKMSSLLRAPGIKPVDPGLVHITMKFLGDIPEDKVEPIASALSRINCTPFEARIRGAGVFPKLSYIKVIWLGAQGDFDTLHREIERVLSPFGFEKERQFTPHATLARVKQLSEKAGLLEKVKKIENIDLGAMKVEAISLKKSTLTPRGPVYETLREIKLKS*