ggKbase home page

SR-VP_26_10_2019_2_100cm_scaffold_3095

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_3095_1
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(305..943)
DNA (639bp) protein (213aa)
3-oxoacid CoA-transferase subunit B id=1266622 bin=GWE1_Burkholderiales_65_30 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
scoB; acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit
Tax=GWA2_Curvibacter_64_110_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_2
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

1053..1766
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JI94_BURP1
Uncharacterized protein {ECO:0000313|EMBL:KIJ71281.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3095_3
unknown

Not on your lists

1767..3107
DNA (1341bp) protein (447aa)
UPI0003D1AE8E related cluster n=1 Tax=unknown RepID=UPI0003D1AE8E
4Fe-4S ferredoxin
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_4
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3197..4027
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12U76_METBU
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3095_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4042..4764
DNA (723bp) protein (241aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3095_6
unknown

Not on your lists

comp(4783..5742)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU45_METMA
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_7
unknown

Not on your lists

5865..6029
DNA (165bp) protein (55aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6016..7194
DNA (1179bp) protein (393aa)
Radical SAM additional 4Fe4S-binding domain protein n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BMY6_9EURY
Radical SAM additional 4Fe4S-binding domain {ECO:0000313|EMBL:KCZ72862.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
radical SAM additional 4Fe4S-binding domain protein
SR-VP_26_10_2019_2_100cm_scaffold_3095_9
unknown

Not on your lists

comp(7189..7797)
DNA (609bp) protein (203aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_10
unknown

Not on your lists

comp(7882..8259)
DNA (378bp) protein (126aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_11
unknown

Not on your lists


8407..8793
DNA (387bp) protein (129aa)
UPI0003D1AD97 related cluster n=1 Tax=unknown RepID=UPI0003D1AD97
rpsH; 30S ribosomal protein S8
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8774..9823)
DNA (1050bp) protein (350aa)
Digeranylgeranylglycerophospholipid reductase n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S2L4_FERPA
Geranylgeranyl reductase family protein {ECO:0000313|EMBL:KCZ73433.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
geranylgeranyl reductase
SR-VP_26_10_2019_2_100cm_scaffold_3095_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9804..10547)
DNA (744bp) protein (248aa)
Lipoate-protein ligase A {ECO:0000313|EMBL:KCZ73434.1}; EC=2.7.7.63 {ECO:0000313|EMBL:KCZ73434.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
lipoate-protein ligase A (EC:2.7.7.63)
biotin/lipoate A/B protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] id=5240860 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
SR-VP_26_10_2019_2_100cm_scaffold_3095_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10550..10831)
DNA (282bp) protein (94aa)
Bacterial lipoate protein ligase C-terminus n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BWS9_ANAMD
Bacterial lipoate protein ligase C-terminus {ECO:0000313|EMBL:KCZ73435.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Bacterial lipoate protein ligase C-terminus
SR-VP_26_10_2019_2_100cm_scaffold_3095_15
unknown

Not on your lists

comp(10969..11178)
DNA (210bp) protein (70aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3095_16
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11349..12182
DNA (834bp) protein (278aa)
Xylose isomerase-like TIM barrel-domain protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12VU1_METBU
xylose isomerase-like TIM barrel
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3095_17
unknown

Not on your lists

comp(12193..12693)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thermococcus zilligii RepID=UPI00029AA25A
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_18
unknown

Not on your lists

comp(12699..14033)
DNA (1335bp) protein (445aa)
recombinase RecF n=1 Tax=Thermococcus zilligii RepID=UPI00029A799C
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_19
unknown

Not on your lists

comp(14114..16042)
DNA (1929bp) protein (643aa)
UvrABC system protein B n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MH84_9EURY
excinuclease ABC subunit B
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_20
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16214..16630
DNA (417bp) protein (139aa)
azoreductase (EC:1.6.99.-)
NAD(P)H dehydrogenase (Quinone) id=4312043 bin=GWC2_Syntrophobacterales_56_13 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_08E140C01_Syntrophobacterales_43_19
SR-VP_26_10_2019_2_100cm_scaffold_3095_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16892..18850)
DNA (1959bp) protein (653aa)
UPI0003D1A98A related cluster n=1 Tax=unknown RepID=UPI0003D1A98A
Archaeal flagella assembly protein J {ECO:0000313|EMBL:KCZ72584.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
type II secretion system F domain-containing protein
SR-VP_26_10_2019_2_100cm_scaffold_3095_22
unknown

Not on your lists

comp(18847..21126)
DNA (2280bp) protein (760aa)
Type II secretion system protein E n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E6N8_METMS
type II secretion system protein E
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3095_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21135..21353)
DNA (219bp) protein (73aa)
Site-determining protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I6I5_METCZ
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
minD-1; cell division ATPase MinD, archaeal
Displaying 23 items

View Taxonomy