ggKbase home page

cg1_0.2_scaffold_1416_c

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg1_0.2_scaffold_1416_c_1
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76..432
DNA (357bp) protein (119aa)
hypothetical protein Tax=CG_Rhodof_04
Putative uncharacterized protein id=1324499 bin=GWE1_T_denit_62_9 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
hypothetical protein
cg1_0.2_scaffold_1416_c_2
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

429..716
DNA (288bp) protein (96aa)
Fis family transcriptional regulator n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002DC0D44 rbh
hypothetical protein Tax=CG_Rhodof_04
helix-turn-helix domain protein
cg1_0.2_scaffold_1416_c_3
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

903..1154
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS00_9BURK rbh
Uncharacterized protein Tax=CG_Rhodof_01
cg1_0.2_scaffold_1416_c_4
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1576..2394)
DNA (819bp) protein (273aa)
Transcriptional regulator, LytR/AlgR family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XR2_RHOFD rbh
LytR/AlgR family transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR Tax=CG_Rhodof_04
LytR/AlgR family transcriptional regulator
cg1_0.2_scaffold_1416_c_5
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2391..3449)
DNA (1059bp) protein (353aa)
histidine kinase internal protein; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3] Tax=CG_Rhodof_04
Histidine kinase internal protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XR3_RHOFD rbh
histidine kinase internal protein
cg1_0.2_scaffold_1416_c_6
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3501..5003
DNA (1503bp) protein (501aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=CG_Rhodof_04
Argininosuccinate lyase n=1 Tax=Acidovorax sp. CF316 RepID=J1EKU3_9BURK rbh
argininosuccinate lyase
cg1_0.2_scaffold_1416_c_7
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5157..5675
DNA (519bp) protein (173aa)
Putative transmembrane protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221B6_RHOFD rbh
hypothetical protein Tax=CG_Rhodof_04
hypothetical protein
cg1_0.2_scaffold_1416_c_8
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5882..7015)
DNA (1134bp) protein (378aa)
FAD dependent oxidoreductase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LD31_RALME rbh
FAD dependent oxidoreductase Tax=CG_Rhodof_04
FAD dependent oxidoreductase
cg1_0.2_scaffold_1416_c_9
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7199..8347
DNA (1149bp) protein (383aa)
lldD; L-lactate dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] Tax=CG_Rhodof_04
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Polaromonas sp. CF318 RepID=J2TKH2_9BURK rbh
lldD; L-lactate dehydrogenase
cg1_0.2_scaffold_1416_c_10
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8388..11075)
DNA (2688bp) protein (896aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VY4_RHOFD rbh
GCN5-like protein N-acetyltransferase; K09181 hypothetical protein Tax=CG_Rhodof_04
GCN5-like protein N-acetyltransferase
cg1_0.2_scaffold_1416_c_11
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11196..12458
DNA (1263bp) protein (421aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=CG_Rhodof_04
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VY3_RHOFD rbh
cg1_0.2_scaffold_1416_c_12
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12470..12946)
DNA (477bp) protein (159aa)
PilT protein domain protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK04_9BURK rbh
DNA-binding protein Tax=CG_Rhodof_04
DNA-binding protein
cg1_0.2_scaffold_1416_c_13
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12943..13182)
DNA (240bp) protein (80aa)
AbrC family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK05_9BURK rbh
transcriptional regulator, AbrB family Tax=CG_Rhodof_04
transcriptional regulator, AbrB family
cg1_0.2_scaffold_1416_c_14
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13264..14109)
DNA (846bp) protein (282aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TC75_ACIDE rbh
queF; 7-cyano-7-deazaguanine reductase Tax=CG_Rhodof_04
queF; 7-cyano-7-deazaguanine reductase
cg1_0.2_scaffold_1416_c_15
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14180..14956)
DNA (777bp) protein (259aa)
UPF0246 protein Rfer_2372 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Y2372_RHOFD rbh
hypothetical protein; K09861 hypothetical protein Tax=CG_Rhodof_04
hypothetical protein
cg1_0.2_scaffold_1416_c_16
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15144..15707
DNA (564bp) protein (188aa)
ahpC; alkyl hydroperoxide reductase subunit C AhpC (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] Tax=CG_Rhodof_04
ahpC; alkyl hydroperoxide reductase subunit C AhpC (EC:1.11.1.15) rbh
Alkyl hydroperoxide reductase subunit C AhpC n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HTY0_RUBGI rbh
cg1_0.2_scaffold_1416_c_17
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15880..17439
DNA (1560bp) protein (520aa)
Alkyl hydroperoxide reductase subunit F n=1 Tax=Acidovorax sp. KKS102 RepID=K0HQL7_9BURK rbh
alkyl hydroperoxide reductase subunit F Tax=CG_Rhodof_04
alkyl hydroperoxide reductase subunit F
cg1_0.2_scaffold_1416_c_18
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17581..17832
DNA (252bp) protein (84aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=CG_Rhodof_04
Transcription-repair-coupling factor n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YT8_RHOFD
transcription-repair coupling factor
cg1_0.2_scaffold_1416_c_19
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17870..18769)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VF3_RHOFD rbh
LysR family transcriptional regulator Tax=CG_Rhodof_04
LysR family transcriptional regulator
cg1_0.2_scaffold_1416_c_20
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18905..19315
DNA (411bp) protein (137aa)
LysR family transcriptional regulator n=1 Tax=Leeia oryzae RepID=UPI00035FA320 rbh
DoxX; K15977 putative oxidoreductase Tax=CG_Rhodof_04
DoxX
cg1_0.2_scaffold_1416_c_21
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19334..20125
DNA (792bp) protein (264aa)
Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VF0_RHOFD rbh
extradiol ring-cleavage dioxygenase III subunit B Tax=CG_Rhodof_04
extradiol ring-cleavage dioxygenase III subunit B
cg1_0.2_scaffold_1416_c_22
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20126..21088)
DNA (963bp) protein (321aa)
Transcriptional regulator, LysR family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVD1_ACCPU rbh
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator Tax=CG_Rhodof_04
LysR family transcriptional regulator
cg1_0.2_scaffold_1416_c_23
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21203..21394
DNA (192bp) protein (64aa)
Tax=CG_Rhodof_04
cg1_0.2_scaffold_1416_c_24
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21428..21619
DNA (192bp) protein (64aa)
Tax=CG_Rhodof_04
cg1_0.2_scaffold_1416_c_25
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21695..22462
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YT9_RHOFD rbh
hypothetical protein Tax=CG_Rhodof_04
hypothetical protein
cg1_0.2_scaffold_1416_c_26
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22497..23111
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E7_ACIDE rbh
hypothetical protein Tax=CG_Rhodof_04
hypothetical protein
cg1_0.2_scaffold_1416_c_27
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23162..23902
DNA (741bp) protein (247aa)
phosphoserine phosphatase SerB; K01079 phosphoserine phosphatase [EC:3.1.3.3] Tax=CG_Rhodof_04
Phosphoserine phosphatase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YU0_RHOFD rbh
phosphoserine phosphatase SerB
cg1_0.2_scaffold_1416_c_28
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23940..25214)
DNA (1275bp) protein (425aa)
Type III restriction system endonuclease, putative n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2H8_ACISJ rbh
type III restriction system endonuclease Tax=CG_Rhodof_04
type III restriction system endonuclease
cg1_0.2_scaffold_1416_c_29
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25285..26472)
DNA (1188bp) protein (396aa)
Type III restriction system endonuclease, putative n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2H8_ACISJ
type III restriction system endonuclease Tax=CG_Rhodof_04
type III restriction system endonuclease
cg1_0.2_scaffold_1416_c_30
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26465..26596)
DNA (132bp) protein (44aa)
Tax=CG_Rhodof_04
Displaying 30 items

View Taxonomy