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cg_0.2_sub10_scaffold_294_c

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg_0.2_sub10_scaffold_294_c_trna_1
unknown

Not on your lists

comp(271..344)
DNA (74bp)
transferRNA
cg_0.2_sub10_scaffold_294_c_1
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(431..1552)
DNA (1122bp) protein (374aa)
mrdB; rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=CG_Nitrosp_01
Rod shape-determining protein RodA id=2244122 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
mrdB; rod shape-determining protein RodA
cg_0.2_sub10_scaffold_294_c_2
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(1593..3368)
DNA (1776bp) protein (592aa)
penicillin-binding protein 2; K05515 penicillin-binding protein 2 Tax=CG_Nitrosp_01
Penicillin-binding protein 2 id=3720900 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
penicillin-binding protein 2
cg_0.2_sub10_scaffold_294_c_3
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(3358..3822)
DNA (465bp) protein (155aa)
Rod shape-determining protein MreD Tax=CG_Nitrosp_01
Rod shape-determining protein MreD id=3720901 bin=GWF2_Nitrospirae_44_13 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_294_c_4
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(3819..4601)
DNA (783bp) protein (261aa)
mreC; rod shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=CG_Nitrosp_01
Rod shape-determining protein MreC id=3720978 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mreC; rod shape-determining protein MreC
cg_0.2_sub10_scaffold_294_c_5
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4601..5635)
DNA (1035bp) protein (345aa)
Rod shape-determining protein MreB id=3720980 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=GWF2_Nitrospirae_44_13_curated
rod shape-determining protein MreB
cg_0.2_sub10_scaffold_294_c_6
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(5679..6122)
DNA (444bp) protein (148aa)
RDD family, putative id=3720982 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RDD family Tax=GWF2_Nitrospirae_44_13_curated
RDD family protein
cg_0.2_sub10_scaffold_294_c_7
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

6169..8022
DNA (1854bp) protein (618aa)
Penicillin-binding protein 1 id=3720984 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
penicillin-binding protein 1 Tax=GWF2_Nitrospirae_44_13_curated
penicillin-binding protein 1
cg_0.2_sub10_scaffold_294_c_8
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(7976..8881)
DNA (906bp) protein (302aa)
ftsY; signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor Tax=RBG_16_Nitrospirae_43_8_curated
Signal recognition particle receptor FtsY id=3720985 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
ftsY; signal recognition particle-docking protein FtsY
cg_0.2_sub10_scaffold_294_c_9
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

9132..10685
DNA (1554bp) protein (518aa)
beta-glucosidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] Tax=GWF2_Nitrospirae_44_13_curated
Beta-glucosidase id=3720986 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
beta-glucosidase
cg_0.2_sub10_scaffold_294_c_10
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

10835..11176
DNA (342bp) protein (114aa)
Methylation site containing protein id=3720987 bin=GWF2_Nitrospirae_44_13 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
type II secretory pathway, pseudopilin PulG; K10924 MSHA pilin protein MshA Tax=GWF2_Nitrospirae_44_13_curated
type II secretory pathway, pseudopilin PulG
cg_0.2_sub10_scaffold_294_c_11
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

11234..11575
DNA (342bp) protein (114aa)
MshA, mannose-sensitive haemaglutinin id=3720988 bin=GWF2_Nitrospirae_44_13 species=Marinobacter hydrocarbonoclasticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mshA; type II secretory pathway protein PulG Tax=GWF2_Nitrospirae_44_13_curated
mannose-sensitive hemagglutinin a
cg_0.2_sub10_scaffold_294_c_12
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

11598..13415
DNA (1818bp) protein (606aa)
O-antigen polymerase id=3720989 bin=GWF2_Nitrospirae_44_13 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
O-antigen polymerase Tax=GWF2_Nitrospirae_44_13_curated
cg_0.2_sub10_scaffold_294_c_13
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

13651..14748
DNA (1098bp) protein (366aa)
Chaperone protein DnaJ id=3720990 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
dnaJ2; chaperone protein DnaJ Tax=GWF2_Nitrospirae_44_13_curated
dnaJ2; chaperone protein DnaJ
cg_0.2_sub10_scaffold_294_c_14
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

14786..15133
DNA (348bp) protein (116aa)
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=CG_Nitrosp_01
Transcriptional regulator id=3720991 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
transcriptional regulator
cg_0.2_sub10_scaffold_294_c_15
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

15219..17894
DNA (2676bp) protein (892aa)
chaperone ClpB 1; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=CG_Nitrosp_01
Chaperone ClpB 1 id=3720992 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
chaperone ClpB 1
cg_0.2_sub10_scaffold_294_c_16
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

17916..19010
DNA (1095bp) protein (365aa)
radical SAM protein Tax=CG_Nitrosp_01
Radical SAM domain protein id=3720994 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
radical SAM protein
cg_0.2_sub10_scaffold_294_c_17
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

19196..20335
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037FA0D9
sodium/hydrogen exchanger Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Na+/H+ antiporter
cg_0.2_sub10_scaffold_294_c_18
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

20328..20750
DNA (423bp) protein (141aa)
Universal stress protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C5L8_DESTA
universal stress protein UspA-like protein Tax=RBG_16_Nitrospirae_43_8_curated
universal stress protein UspA-like protein
cg_0.2_sub10_scaffold_294_c_19
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

20898..21833
DNA (936bp) protein (312aa)
Dynamin family protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LML6_SYNFM
dynamin family protein Tax=CG_Nitrosp_01
dynamin family protein
cg_0.2_sub10_scaffold_294_c_20
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

21966..22097
DNA (132bp) protein (44aa)
Haloacid dehalogenase domain protein hydrolase type 3 n=1 Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C580_THEGP
haloacid dehalogenase Tax=CG_Nitrosp_01
haloacid dehalogenase
cg_0.2_sub10_scaffold_294_c_21
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

22098..23321
DNA (1224bp) protein (408aa)
MFS transporter family protein Tax=CG_Nitrosp_01
Major facilitator superfamily MFS_1 id=3720996 bin=GWF2_Nitrospirae_44_13 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
MFS transporter family protein
cg_0.2_sub10_scaffold_294_c_22
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

23400..23678
DNA (279bp) protein (93aa)
Marine sediment metagenome DNA, contig: S01H1_L06407 Tax=CG_Nitrosp_01
cg_0.2_sub10_scaffold_294_c_23
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

23678..24118
DNA (441bp) protein (147aa)
Nucleotide binding protein PINc n=2 Tax=Haloferax RepID=M0GUZ2_HALL2 rbh
toxin-antitoxin system toxin component, PIN family Tax=CG_Nitrosp_01
toxin-antitoxin system toxin component, PIN family
cg_0.2_sub10_scaffold_294_c_24
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists


comp(24096..25430)
DNA (1335bp) protein (445aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=CG_Nitrosp_01
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase id=3720997 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_294_c_25
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

25664..26875
DNA (1212bp) protein (404aa)
Type IV-A pilus assembly ATPase PilB id=3720998 bin=GWF2_Nitrospirae_44_13 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=GWF2_Nitrospirae_44_13_curated
type IV-A pilus assembly ATPase PilB
Displaying 26 items

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