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cg_0.2_sub10_scaffold_760_c

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg_0.2_sub10_scaffold_760_c_1
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(198..455)
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=CG_Nitrosp_02
cg_0.2_sub10_scaffold_760_c_2
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(632..1039)
DNA (408bp) protein (136aa)
putative nucleic acid-binding protein, contains PIN domain Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Putative uncharacterized protein id=4948397 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
cg_0.2_sub10_scaffold_760_c_3
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(1027..1293)
DNA (267bp) protein (89aa)
Transcriptional regulator, CopG family Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
Transcriptional regulator, CopG family id=2918326 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
cg_0.2_sub10_scaffold_760_c_4
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(1798..2760)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74H44_GEOSL
hypothetical protein Tax=CG_Nitrosp_01
hypothetical protein
cg_0.2_sub10_scaffold_760_c_5
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(2905..3819)
DNA (915bp) protein (305aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] Tax=CG_Nitrosp_01
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase id=4127934 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_760_c_6
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(3881..4201)
DNA (321bp) protein (107aa)
HesB/YadR/YfhF family protein Tax=CG_Nitrosp_01
HesB/YadR/YfhF family protein id=4127933 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
HesB/YadR/YfhF family protein
cg_0.2_sub10_scaffold_760_c_7
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

4375..5463
DNA (1089bp) protein (363aa)
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=CG_Nitrosp_01
Probable dual-specificity RNA methyltransferase RlmN id=4127932 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
radical SAM protein
cg_0.2_sub10_scaffold_760_c_8
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

5637..6569
DNA (933bp) protein (311aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=CG_Nitrosp_01
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase id=4127931 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_760_c_9
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

6649..8583
DNA (1935bp) protein (645aa)
aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=CG_Nitrosp_01
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase, putative id=4127930 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_760_c_10
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

8608..9756
DNA (1149bp) protein (383aa)
ribD; riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.
ribD; riboflavin biosynthesis bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase RibD (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD id=4127929 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_760_c_11
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(9757..11208)
DNA (1452bp) protein (484aa)
pepA; leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=CG_Nitrosp_01
Probable cytosol aminopeptidase id=4127928 bin=GWF2_Nitrospirae_44_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
pepA; leucyl aminopeptidase
cg_0.2_sub10_scaffold_760_c_12
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(11216..11581)
DNA (366bp) protein (122aa)
id=4127927 Tax=CG_Nitrosp_01
id=4127927 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_760_c_13
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

11666..11899
DNA (234bp) protein (78aa)
Tax=CG_Nitrosp_01
cg_0.2_sub10_scaffold_760_c_trna_1
unknown

Not on your lists

comp(11670..11751)
DNA (82bp)
transferRNA
cg_0.2_sub10_scaffold_760_c_14
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

11936..13342
DNA (1407bp) protein (469aa)
NAD-dependent malic enzyme (EC:1.1.1.38); K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=CG_Nitrosp_01
NAD-dependent malic enzyme (EC:1.1.1.38)
NAD-dependent malic enzyme id=3929838 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cg_0.2_sub10_scaffold_760_c_15
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(13339..14220)
DNA (882bp) protein (294aa)
methylenetetrahydrofolate reductase Tax=CG_Nitrosp_01
Methylenetetrahydrofolate reductase id=3929897 bin=GWF2_Nitrospirae_44_13 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
methylenetetrahydrofolate reductase
cg_0.2_sub10_scaffold_760_c_16
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(14217..14882)
DNA (666bp) protein (222aa)
hypothetical protein Tax=CG_Nitrosp_01
Putative uncharacterized protein id=3929903 bin=GWF2_Nitrospirae_44_13 species=uncultured Nitrospirae bacterium MY4-5C genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
cg_0.2_sub10_scaffold_760_c_17
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(15031..16263)
DNA (1233bp) protein (411aa)
hypothetical protein Tax=CG_Nitrosp_01
Putative uncharacterized protein id=2312483 bin=GWA2_OP3_53_43 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
cg_0.2_sub10_scaffold_760_c_18
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

comp(16304..16636)
DNA (333bp) protein (111aa)
hypothetical protein id=2154337 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein Tax=GWB2_Nitrospirae_47_37_curated
Displaying 19 items

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