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CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_1

Not on your lists

3..1118
DNA (1116bp) protein (372aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037098D7
Uncharacterized protein {ECO:0000313|EMBL:KKN91786.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rod shape-determining protein RodA
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_2

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1360..2319
DNA (960bp) protein (320aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000367D7A6
Marine sediment metagenome DNA, contig: S06H3_S03683 {ECO:0000313|EMBL:GAI31516.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_3
GWA2_RIF_OD1_07_46_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

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2522..4864
DNA (2343bp) protein (781aa)
Conserved hypothetical tpr repeat protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PX50_9BACT bin=ACD76 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tetratricopeptide TPR_2
Tax=GWA2_RIF_OD1_07_46_15_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_4
unknown

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comp(5425..5694)
DNA (270bp) protein (90aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_5
CG_CPR10_03, CG_CPR10, Bacteria

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5703..8990
DNA (3288bp) protein (1096aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036B10E4
Tax=CG_CPR10_03
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_6
CG_CPR10_01, CG_CPR10, Bacteria

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9005..12787
DNA (3783bp) protein (1261aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003738BD2
DNA-directed RNA polymerase subunit beta'
Tax=CG_CPR10_01
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_7
RBG_13_RIF_OD1_07_38_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

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13104..15302
DNA (2199bp) protein (733aa)
hypothetical protein, partial Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371C9B6
putative cell division FtsK/SpoIIIE
Tax=RBG_13_RIF_OD1_07_38_11_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_8
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


15593..16594
DNA (1002bp) protein (334aa)
recombinase RecA Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036C84F8
recA protein
Tax=RBG_13_RIF_OD1_07_36_15_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_9
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

comp(16941..17378)
DNA (438bp) protein (146aa)
single-stranded DNA-binding protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003754173
single-strand-binding protein
Tax=CG_CPR10_03
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_10
CG_CPR10_02, CG_CPR10, Bacteria

Not on your lists


comp(17460..17879)
DNA (420bp) protein (140aa)
30S ribosomal protein S6 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
30S ribosomal protein S6
Tax=CG_CPR10_02
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_11
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

comp(18014..19048)
DNA (1035bp) protein (345aa)
GTP-binding protein YchF bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
GTP-binding protein YchF
Tax=CG_CPR10_01
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_12
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

19143..20570
DNA (1428bp) protein (476aa)
Phosphomannomutase Tax=Melioribacter roseus (strain P3M) RepID=I6YVR4_MELRP
phosphomannomutase
Tax=RBG_13_RIF_OD1_07_42_11_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_13
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

comp(20782..21759)
DNA (978bp) protein (326aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035FD2BB
Tax=CG_CPR10_03
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_14
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

comp(21852..23555)
DNA (1704bp) protein (568aa)
rnjA; ribonuclease J 1 (EC:3.1.-.-)
RNA-metabolising metallo-beta-lactamase bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=CG_CPR10_01
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_trna_1
unknown

Not on your lists

comp(23646..23727)
DNA (82bp)
transferRNA Leu
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_15
CG_CPR10_02, CG_CPR10, Bacteria

Not on your lists

comp(24009..24644)
DNA (636bp) protein (212aa)
UPI0003D1AAFB related cluster Tax=unknown RepID=UPI0003D1AAFB
thermophilic glucose-6-phosphate isomerase-like enzyme
Tax=CG_CPR10_02
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_16
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

comp(24635..26737)
DNA (2103bp) protein (701aa)
Extracellular solute-binding protein bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
putative ABC transporter substrate binding protein
Tax=CG_CPR10_01
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_17
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

comp(26912..27133)
DNA (222bp) protein (74aa)
Preprotein translocase, SecG subunit bin=GWA1_ZB2_49_26 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
preprotein translocase subunit SecG
Tax=CG_CPR10_03
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_18
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(27141..27485)
DNA (345bp) protein (115aa)
Putative uncharacterized protein bin=GWA1_ZB2_49_26 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
membrane protein
Tax=RBG_13_RIF_OD1_07_42_11_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_19
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(27519..28880)
DNA (1362bp) protein (454aa)
Excinuclease ABC C subunit domain protein bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Excinuclease ABC subunit C
Tax=RBG_13_RIF_OD1_07_36_15_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1710_c_20

Not on your lists

29347..29736
DNA (390bp) protein (130aa)
UvrABC system protein A {ECO:0000313|EMBL:KKS89975.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_43_11.;"
UvrABC system protein A bin=GWA1_ZB2_49_26 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
excinuclease ABC subunit A
Displaying 21 items

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