ggKbase home page

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_1
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

1..972
DNA (972bp) protein (324aa)
Fibronectin, type III domain protein {ECO:0000313|EMBL:KKP87945.1}; Flags: Fragment;; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_2
unknown

Not on your lists

2490..2636
DNA (147bp) protein (49aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_3
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

4519..7680
DNA (3162bp) protein (1054aa)
Fibronectin, type III domain protein {ECO:0000313|EMBL:KKP87945.1}; Flags: Fragment;; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
seg 30..43 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
PE_PGRS53; PE-PGRS family protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_4

Not on your lists

7770..8360
DNA (591bp) protein (197aa)
transmembrane_regions 35..52 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Uncharacterized protein {ECO:0000313|EMBL:EKE14793.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_5

Not on your lists

8386..9018
DNA (633bp) protein (211aa)
seg 45..67 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Uncharacterized protein {ECO:0000313|EMBL:EKE14790.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_6

Not on your lists

9008..9268
DNA (261bp) protein (87aa)
seg 9..28 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Uncharacterized protein {ECO:0000313|EMBL:EKE14791.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_7
CG_Berkel_03, Berkelbacteria, Bacteria

Not on your lists

9277..11511
DNA (2235bp) protein (745aa)
response regulator receiver protein bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
hypothetical protein
Tax=CG_Berkel_03
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_8
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

11514..12575
DNA (1062bp) protein (354aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2A3W4_9BACT
twitching motility protein PilT
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_9
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

12582..13640
DNA (1059bp) protein (353aa)
Type II secretion system F domain protein bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
type II secretion system F domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_10

Not on your lists

13705..14106
DNA (402bp) protein (134aa)
seg 141..156 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE19512.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
secretory protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_11
GWA2_OP11_35_8_partial, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

14129..14839
DNA (711bp) protein (237aa)
Prepilin peptidase (EC:3.4.23.43)
peptidase A24 Tax=Clostridium tyrobutyricum RepID=UPI0002DB2A7A
Type 4 prepilin-like protein leader peptide-processing enzyme {ECO:0000313|EMBL:KKP86127.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_35_8.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_12
R_OP11_Woesebacteria_40_22, Woesebacteria, Microgenomates, Bacteria

Not on your lists

14907..15389
DNA (483bp) protein (161aa)
Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_40_22_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_13
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

15389..15859
DNA (471bp) protein (157aa)
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_14
RHI_RIF_OD1_06_38_11, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

15843..16436
DNA (594bp) protein (198aa)
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_06_38_11_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_15
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

16429..17217
DNA (789bp) protein (263aa)
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_16
R_OP11_Levybacteria_38_21, Levybacteria, Microgenomates, Bacteria

Not on your lists

17228..17659
DNA (432bp) protein (144aa)
Ribonuclease H bin=GWC1_CPR2_39_9 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
ribonuclease HI
Tax=RIFCSPLOWO2_01_FULL_OP11_Levybacteria_38_21_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_17
unknown

Not on your lists

17837..18001
DNA (165bp) protein (55aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_18
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

18171..18455
DNA (285bp) protein (95aa)
10 kDa chaperonin Tax=uncultured bacterium RepID=K2A550_9BACT
10 kDa chaperonin {ECO:0000313|EMBL:KKP88243.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
chaperonin Cpn10
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_19
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

18470..20101
DNA (1632bp) protein (544aa)
60 kDa chaperonin {ECO:0000313|EMBL:KKP88244.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
60 kDa chaperonin bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
chaperonin GroEL
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_20
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

comp(20104..20613)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP88245.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
PRC-barrel domain protein bin=GWC1_TM7_41_48 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWC1_TM7_41_48 organism_group=TM7
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_21
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

comp(20650..21210)
DNA (561bp) protein (187aa)
elongation factor P Tax=Oceanobacillus sp. Ndiop RepID=UPI0002895AF1
Elongation factor P {ECO:0000313|EMBL:KKP88246.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
elongation factor P
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_22
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists


comp(21215..21424)
DNA (210bp) protein (70aa)
30S ribosomal protein S18 {ECO:0000313|EMBL:KKP88247.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
30S ribosomal protein S18 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
30S ribosomal protein S18
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_23
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

comp(21438..21911)
DNA (474bp) protein (158aa)
Single-stranded DNA-binding protein {ECO:0000313|EMBL:KKP88248.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
Single-stranded DNA-binding protein bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
hypothetical protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_24
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

comp(21924..22418)
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Eimeria praecox RepID=U6H6B2_9EIME
Uncharacterized protein {ECO:0000313|EMBL:KKP88249.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_25
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

comp(22463..22669)
DNA (207bp) protein (69aa)
hypothetical protein Tax=Paenisporosarcina sp. TG20 RepID=UPI0002F21859
Uncharacterized protein {ECO:0000313|EMBL:KKP88250.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
membrane protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_1064_c_26
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

22904..24121
DNA (1218bp) protein (406aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP89112.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA2_35_9.;"
Displaying 26 items

View Taxonomy