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cg2_3.0_scaffold_1340_c

Search features with annotation key words

Displaying items 1-30 of 52 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg2_3.0_scaffold_1340_c_1
unknown

Not on your lists

comp(3..254)
DNA (252bp) protein (84aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_2
ACD80, SR1, Bacteria

Not on your lists

comp(674..1774)
DNA (1101bp) protein (367aa)
hypothetical protein
seg 343..355 id=132906 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
seg 343..355 Tax=ACD80
cg2_3.0_scaffold_1340_c_3
unknown

Not on your lists

comp(1946..2140)
DNA (195bp) protein (65aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_4
unknown

Not on your lists

2702..2926
DNA (225bp) protein (75aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_5
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

3050..3271
DNA (222bp) protein (74aa)
hypothetical protein
transmembrane_regions 21..40 id=983591 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
transmembrane_regions 21..40 id=983591 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
cg2_3.0_scaffold_1340_c_6
R_RIF_OD1_10_43_60, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

3825..4241
DNA (417bp) protein (139aa)
M16 family peptidase (EC:3.4.24.-) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_43_60_curated
peptidase M16 protein
peptidase M16 domain-containing protein id=983056 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
cg2_3.0_scaffold_1340_c_7
GWA2_OD1_38_13, Parcubacteria, Bacteria

Not on your lists

4245..4460
DNA (216bp) protein (72aa)
peptidase M16 protein
peptidase M16 domain-containing protein id=983056 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
Peptidase M16 domain protein Tax=GWA2_OD1_38_13
cg2_3.0_scaffold_1340_c_8
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

4482..4661
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00037D4FED rbh
peptidase M16 protein
peptidase M16 domain-containing protein id=983056 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
cg2_3.0_scaffold_1340_c_9
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4815..5105)
DNA (291bp) protein (97aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YRE2_AEQSU
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:KJJ38137.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibact
sigma-70 family RNA polymerase sigma factor
cg2_3.0_scaffold_1340_c_10
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5400..5537)
DNA (138bp) protein (46aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Prevotella sp. CAG:873 RepID=R7J200_9BACT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:CDE56897.1}; TaxID=1262936 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples
sigma-70 family RNA polymerase sigma factor
cg2_3.0_scaffold_1340_c_11
unknown

Not on your lists

comp(5564..6055)
DNA (492bp) protein (164aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_12
unknown

Not on your lists

comp(6149..6301)
DNA (153bp) protein (51aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_13
unknown

Not on your lists

comp(6341..6676)
DNA (336bp) protein (112aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_14
unknown

Not on your lists

comp(6692..7111)
DNA (420bp) protein (140aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_15
ACD80, SR1, Bacteria

Not on your lists

comp(7176..7409)
DNA (234bp) protein (78aa)
exodeoxyribonuclease; K01142 exodeoxyribonuclease III [EC:3.1.11.2] Tax=ACD80
exodeoxyribonuclease III Xth (EC:4.2.99.18); K01142 exodeoxyribonuclease III [EC:3.1.11.2] id=983087 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
hypothetical protein
cg2_3.0_scaffold_1340_c_16
ACD80, SR1, Bacteria

Not on your lists

comp(7521..7757)
DNA (237bp) protein (79aa)
exodeoxyribonuclease; K01142 exodeoxyribonuclease III [EC:3.1.11.2] Tax=ACD80
exodeoxyribonuclease; K01142 exodeoxyribonuclease III [EC:3.1.11.2] id=131804 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
hypothetical protein
cg2_3.0_scaffold_1340_c_17
ACD80, SR1, Bacteria

Not on your lists

comp(7767..7961)
DNA (195bp) protein (65aa)
exodeoxyribonuclease; K01142 exodeoxyribonuclease III [EC:3.1.11.2] id=131804 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
exodeoxyribonuclease; K01142 exodeoxyribonuclease III [EC:3.1.11.2] Tax=ACD80
hypothetical protein
cg2_3.0_scaffold_1340_c_18
unknown

Not on your lists

comp(8270..8563)
DNA (294bp) protein (98aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_19
ACD80, SR1, Bacteria

Not on your lists

comp(8771..9127)
DNA (357bp) protein (119aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=ACD80
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=131802 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
hypothetical protein
cg2_3.0_scaffold_1340_c_20
unknown

Not on your lists

comp(9518..9721)
DNA (204bp) protein (68aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_21
unknown

Not on your lists

9884..10213
DNA (330bp) protein (110aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_22
SAR324 cluster bacterium JCVI-SC AAA005, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10412..10726)
DNA (315bp) protein (105aa)
sulfatase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626393 id=983137 bin=RAAC1_SR1 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC1_SR1 organism_group=SR1 rbh
sulfatase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626393 id=983137 bin=RAAC1_SR1 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC1_SR1 organism_group=SR1
sulfatase
cg2_3.0_scaffold_1340_c_23
SAR324 cluster bacterium JCVI-SC AAA005, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10889..11047)
DNA (159bp) protein (53aa)
sulfatase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626393 id=983137 bin=RAAC1_SR1 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC1_SR1 organism_group=SR1
sulfatase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626393 id=983137 bin=RAAC1_SR1 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC1_SR1 organism_group=SR1
sulfatase
cg2_3.0_scaffold_1340_c_24
SAR324 cluster bacterium JCVI-SC AAA005, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11288..11659)
DNA (372bp) protein (124aa)
sulfatase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626393 id=983137 bin=RAAC1_SR1 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC1_SR1 organism_group=SR1
sulfatase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002626393 id=983137 bin=RAAC1_SR1 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC1_SR1 organism_group=SR1
sulfatase
cg2_3.0_scaffold_1340_c_25
unknown

Not on your lists

11748..11903
DNA (156bp) protein (52aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_26
unknown

Not on your lists

11912..12193
DNA (282bp) protein (94aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_27
unknown

Not on your lists

comp(12076..12543)
DNA (468bp) protein (156aa)

This feature has no annotations

cg2_3.0_scaffold_1340_c_28
GWF1_Spirochaetes_51_8_curated, Spirochaetes, Bacteria

Not on your lists

comp(12485..12721)
DNA (237bp) protein (79aa)
dead/deah box helicase domain protein; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] Tax=GWF1_Spirochaetes_51_8_curated
DEAD/DEAH box helicase domain protein n=1 Tax=Thermosipho melanesiensis (strain BI429 / DSM 12029) RepID=A6LL98_THEM4
DEAD/DEAH box helicase domain-containing protein
cg2_3.0_scaffold_1340_c_29

Not on your lists

comp(12743..13045)
DNA (303bp) protein (101aa)
fsi:Flexsi_0702 DEAD/DEAH box helicase domain-containing protein; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] id=982722 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKN06667.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cg2_3.0_scaffold_1340_c_30
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(13061..13537)
DNA (477bp) protein (159aa)
DNA/RNA helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] Tax=GWB1_Spirochaetes_36_13_curated
hypothetical protein
Displaying items 1-30 of 52 in total

View Taxonomy