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cg2_3.0_scaffold_3254_c

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg2_3.0_scaffold_3254_c_1
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2..811
DNA (810bp) protein (270aa)
Tax=CG_Nomura_02
cg2_3.0_scaffold_3254_c_2
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(1029..1268)
DNA (240bp) protein (80aa)
transmembrane_regions Tax=CG_Nomura_02
transmembrane_regions id=5227144 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
cg2_3.0_scaffold_3254_c_3
GWA1_OD1_44_13, Parcubacteria, Bacteria

Not on your lists

comp(1291..1638)
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT37476.1}; TaxID=1618788 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_44_13.;"
cg2_3.0_scaffold_3254_c_4
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(1833..2120)
DNA (288bp) protein (96aa)
Tax=CG_Nomura_02
cg2_3.0_scaffold_3254_c_5
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(2126..2683)
DNA (558bp) protein (186aa)
hypothetical protein Tax=CG_Nomura_02
Uncharacterized protein id=5227147 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
hypothetical protein rbh
cg2_3.0_scaffold_3254_c_6
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(2820..3236)
DNA (417bp) protein (139aa)
Putative uncharacterized protein Tax=CG_Nomura_02
Putative uncharacterized protein id=5227148 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
cg2_3.0_scaffold_3254_c_7
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(3283..4605)
DNA (1323bp) protein (441aa)
transmembrane_regions Tax=CG_Nomura_02
transmembrane_regions id=5803525 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
cg2_3.0_scaffold_3254_c_8
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4621..5145)
DNA (525bp) protein (175aa)
methylase involved in ubiquinone/menaquinone biosynthesis Tax=CG_Nomura_02
type 11 methyltransferase id=5803526 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
methylase involved in ubiquinone/menaquinone biosynthesis
cg2_3.0_scaffold_3254_c_9
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


comp(5395..7863)
DNA (2469bp) protein (823aa)
gyrA; DNA gyrase (subunit A) (EC:5.99.1.3) Tax=CG_Nomura_02
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] id=5803528 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
gyrA; DNA gyrase (subunit A) (EC:5.99.1.3)
cg2_3.0_scaffold_3254_c_10
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(8033..8359)
DNA (327bp) protein (109aa)
Tax=CG_Nomura_02
cg2_3.0_scaffold_3254_c_11
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(8376..9005)
DNA (630bp) protein (210aa)
beta-lactamase fold-like Zn-dependent hydrolase Tax=CG_Nomura_02
id=5803530 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
beta-lactamase fold-like Zn-dependent hydrolase
cg2_3.0_scaffold_3254_c_12
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


9585..10679
DNA (1095bp) protein (365aa)
lytB; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K02945 small subunit ribosomal protein S1; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] Tax=CG_Nomura
RNA binding S1 protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW51_9BACT rbh
30S ribosomal protein S1
cg2_3.0_scaffold_3254_c_13
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(10618..11670)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00035D98AA rbh
ATPase Tax=CG_Nomura_02
ATPase
cg2_3.0_scaffold_3254_c_14
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(11829..12050)
DNA (222bp) protein (74aa)
hypothetical protein; K09779 hypothetical protein Tax=CG_Nomura_02
cg2_3.0_scaffold_3254_c_15
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12188..13180)
DNA (993bp) protein (331aa)
fc32f04, wu:fc32f04; si:ch211-116m6.3 Tax=CG_Nomura_02
fc32f04, wu:fc32f04; si:ch211-116m6.3 id=5802133 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds) rbh
cg2_3.0_scaffold_3254_c_16
unknown

Not on your lists

comp(13164..13319)
DNA (156bp) protein (52aa)

This feature has no annotations

cg2_3.0_scaffold_3254_c_17
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13316..13840)
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CG_Nomura_02
RNA polymerase sigma factor, sigma-70 family id=15190917 bin=GWC1_OP11_49_16_COMPLETE species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates) rbh
sigW_1; RNA polymerase sigma-W factor
cg2_3.0_scaffold_3254_c_18
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14093..15538)
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000382A27F rbh
putative DEAD/DEAH box helicase domain protein Tax=CG_Nomura_02
ATP-dependent RNA helicase RhlE
Displaying 18 items

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