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cg2_3.0_scaffold_4853_c

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg2_3.0_scaffold_4853_c_1
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

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comp(786..1256)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q161_9BACT
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 Tax=CG_Nomura_04
30S ribosomal protein S7
cg2_3.0_scaffold_4853_c_2
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


comp(1266..1685)
DNA (420bp) protein (140aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=CG_Nomura_04
30S ribosomal protein S12 id=5227519 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S12
cg2_3.0_scaffold_4853_c_3
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(1821..2447)
DNA (627bp) protein (209aa)
peptidase M50 Tax=CG_Nomura_04
Peptidase M50 id=3423315 bin=GWA1_ZB2_49_26 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
peptidase M50
cg2_3.0_scaffold_4853_c_4
CG_Nomura_02, Nomurabacteria, Parcubacteria, Bacteria

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2460..2717
DNA (258bp) protein (86aa)
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=CG_Nomura_02
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 id=5803004 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
cg2_3.0_scaffold_4853_c_5
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(2803..3192)
DNA (390bp) protein (130aa)
Tax=CG_Nomura_04
cg2_3.0_scaffold_4853_c_6
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(3248..3811)
DNA (564bp) protein (188aa)
PaaX family transcriptional regulator; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=CG_Nomura_04
Transcriptional regulator, PaaX family id=4948078 bin=GWC2_OD1_43_27 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
PaaX family transcriptional regulator
cg2_3.0_scaffold_4853_c_7
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(3875..4735)
DNA (861bp) protein (287aa)
beta-lactamase domain-containing protein; K02238 competence protein ComEC Tax=CG_Nomura_04
DNA internalization-like competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803006 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
beta-lactamase domain-containing protein
cg2_3.0_scaffold_4853_c_8
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(4961..5305)
DNA (345bp) protein (115aa)
Tax=CG_Nomura_04
cg2_3.0_scaffold_4853_c_9
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

5341..5979
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0BFD6_9BACL
putative integral inner membrane protein Tax=CG_Nomura_04
membrane protein
cg2_3.0_scaffold_4853_c_10
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(5964..7436)
DNA (1473bp) protein (491aa)
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=CG_Nomura_04
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803109 bin=OD1_GWC2_34_28 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA internalization-related competence protein ComEC/Rec2
cg2_3.0_scaffold_4853_c_11
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(7433..8467)
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2M347_RHOPA id=133420 bin=ACD81 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein Tax=CG_Nomura_04
hypothetical protein
cg2_3.0_scaffold_4853_c_12
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(8529..9224)
DNA (696bp) protein (232aa)
rnhA; ribonuclease H (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4] Tax=CG_Nomura_04
rnhA; ribonuclease H (EC:3.1.26.4)
ribonuclease H id=12557140 bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cg2_3.0_scaffold_4853_c_13
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(9252..10955)
DNA (1704bp) protein (568aa)
recJ; single-stranded-DNA-specific exonuclease; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=CG_Nomura_04
single-stranded-DNA-specific exonuclease recJ (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] id=5803114 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative single-stranded-DNA-specific exonuclease
cg2_3.0_scaffold_4853_c_14
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

10986..11414
DNA (429bp) protein (143aa)
histidine triad family protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=CG_Nomura_04
Histidine triad (HIT) protein id=4501555 bin=GWA2_OP3_52_12 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
histidine triad family protein
cg2_3.0_scaffold_4853_c_15
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

11721..12431
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BGF7_PETMO
hypothetical protein Tax=CG_Nomura_04
hypothetical protein
cg2_3.0_scaffold_4853_c_16
R_OD1_Nomurabacteria_38_19, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12481..12729)
DNA (249bp) protein (83aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_38_19_curated
Displaying 16 items

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