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cg2_3.0_scaffold_2199_c

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg2_3.0_scaffold_2199_c_1
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(2..118)
DNA (117bp) protein (39aa)
rsmI; Ribosomal RNA small subunit methyltransferase I (EC:2.1.1.198)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=CG_CPR09_01
Ribosomal RNA small subunit methyltransferase I n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5ST99_9BACT
cg2_3.0_scaffold_2199_c_2
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(217..1488)
DNA (1272bp) protein (424aa)
murC; UDP-N-acetylmuramate-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=CG_CPR09_01
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=5803710 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
murC; UDP-N-acetylmuramate-alanine ligase (EC:6.3.2.8)
cg2_3.0_scaffold_2199_c_3
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(1485..2753)
DNA (1269bp) protein (423aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9) Tax=CG_CPR09_01
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00037D1D8E
cg2_3.0_scaffold_2199_c_trna_1
unknown

Not on your lists

comp(2805..2877)
DNA (73bp)
transferRNA
cg2_3.0_scaffold_2199_c_4
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(2868..3557)
DNA (690bp) protein (230aa)
hypothetical protein Tax=CG_CPR09_01
hypothetical protein id=15190991 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
cg2_3.0_scaffold_2199_c_5
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

3655..3891
DNA (237bp) protein (79aa)
Tax=CG_CPR09_01
cg2_3.0_scaffold_2199_c_16S_1
unknown

Not on your lists

comp(4139..6547)
DNA (2409bp)
cg2_3.0_scaffold_2199_c_6
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(4334..4912)
DNA (579bp) protein (193aa)
orf441; orf441 Tax=CG_CPR09_01
Orf933 id=2787857 bin=GWA1_Kazan_50_15 species=Peltigera malacea genus=Peltigera taxon_order=Peltigerales taxon_class=Lecanoromycetes phylum=Ascomycota tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
orf441; orf441
cg2_3.0_scaffold_2199_c_7
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(6799..7047)
DNA (249bp) protein (83aa)
Tax=CG_CPR09_01
cg2_3.0_scaffold_2199_c_8
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(7148..7717)
DNA (570bp) protein (190aa)
Transcriptional regulator, PaaX family n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW48_9BACT
paaX; phenylacetic acid degradation operon transcriptional regulator, paaX family Tax=CG_CPR09_01
paaX; phenylacetic acid degradation operon transcriptional regulator, paaX family
cg2_3.0_scaffold_2199_c_9
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(7940..8839)
DNA (900bp) protein (300aa)
secF; protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF Tax=CG_CPR09_01
Protein translocase subunit SecF id=4305208 bin=GWA2_OP3_52_12 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Protein translocase subunit SecF
cg2_3.0_scaffold_2199_c_10
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(8836..10164)
DNA (1329bp) protein (443aa)
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=CG_CPR09_01
id=5226877 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
protein-export membrane protein SecD
cg2_3.0_scaffold_2199_c_11
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

10252..10926
DNA (675bp) protein (225aa)
transposase Tax=CG_CPR09_01
Transposase id=5227387 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
cg2_3.0_scaffold_2199_c_12
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(10987..12324)
DNA (1338bp) protein (446aa)
sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Tax=CG_CPR09_01
sugar transferase id=5803058 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
cg2_3.0_scaffold_2199_c_13
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

12376..13377
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00036F9A69
hypothetical protein Tax=CG_CPR09_01
hypothetical protein
cg2_3.0_scaffold_2199_c_14
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(13383..14525)
DNA (1143bp) protein (381aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=CG_CPR09_01
Rod shape-determining protein rodA id=2482482 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
rod shape-determining protein RodA
cg2_3.0_scaffold_2199_c_15
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(14522..15286)
DNA (765bp) protein (255aa)
hypothetical protein Tax=CG_CPR09_01
hypothetical protein id=2482479 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
cg2_3.0_scaffold_2199_c_16
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(15681..15947)
DNA (267bp) protein (89aa)
Tax=CG_CPR09_01
cg2_3.0_scaffold_2199_c_17
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(15969..16247)
DNA (279bp) protein (93aa)
Toxin-antitoxin system, toxin component, RelE family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LBU6_RUMHA id=133190 bin=ACD81 species=Blautia hansenii genus=Blautia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RelE/StbE family addiction module toxin Tax=CG_CPR09_01
RelE/StbE family addiction module toxin
cg2_3.0_scaffold_2199_c_18
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

comp(16251..16526)
DNA (276bp) protein (92aa)
Addiction module antitoxin, RelB/DinJ family Tax=CG_CPR09_01
Addiction module antitoxin, RelB/DinJ family id=3336325 bin=GWA2_OP3_53_43 species=Mobiluncus mulieris genus=Mobiluncus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
cg2_3.0_scaffold_2199_c_19
CG_CPR09_01, CG_CPR09, Bacteria

Not on your lists

16947..17402
DNA (456bp) protein (152aa)
Tax=CG_CPR09_01
cg2_3.0_scaffold_2199_c_20
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(18004..18312)
DNA (309bp) protein (103aa)
site-specific DNA endonuclease Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
Homing endonuclease id=2722907 bin=GWC1_OD1_38_17 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
site-specific DNA endonuclease
Displaying 22 items

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