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cg2_3.0_scaffold_1056_c

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg2_3.0_scaffold_1056_c_1
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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278..1411
DNA (1134bp) protein (378aa)
Electron transport complex, RnfABCDGE type, D subunit n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LMT6_9BURK rbh
rnfD; electron transport complex, RnfABCDGE type, D subunit RnfD; K03614 electron transport complex protein RnfD Tax=CG_Rhodocyc_01
rnfD; electron transport complex, RnfABCDGE type, D subunit RnfD
cg2_3.0_scaffold_1056_c_2
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1408..2088
DNA (681bp) protein (227aa)
Electron transport complex, RnfABCDGE type, G subunit RnfG n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HR04_RUBGI rbh
rnfG; electron transport complex, RnfABCDGE type, G subunit RnfG; K03612 electron transport complex protein RnfG Tax=CG_Rhodocyc_01
electron transport complex, RnfABCDGE type, G subunit RnfG
cg2_3.0_scaffold_1056_c_3
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2085..2747
DNA (663bp) protein (221aa)
Electron transport complex, RnfABCDGE type, E subunit n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LMT8_9BURK rbh
electron transport complex, RnfABCDGE type, E subunit; K03613 electron transport complex protein RnfE Tax=CG_Rhodocyc_01
electron transport complex, RnfABCDGE type, E subunit
cg2_3.0_scaffold_1056_c_4
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2737..3318
DNA (582bp) protein (194aa)
Electron transport complex, RnfABCDGE type, A subunit n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CMN4_SIDLE rbh
electron transport complex, RnfABCDGE type, A subunit Tax=CG_Rhodocyc_01
electron transport complex, RnfABCDGE type, A subunit
cg2_3.0_scaffold_1056_c_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3507..4832)
DNA (1326bp) protein (442aa)
Fis family transcriptional regulator n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABE7_9PROT rbh
Fis family transcriptional regulator Tax=CG_Rhodocyc_01
Fis family transcriptional regulator
cg2_3.0_scaffold_1056_c_6
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5071..6339
DNA (1269bp) protein (423aa)
Sulfide:quinone oxidoreductase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFG7_9PROT rbh
sqr; sulfide:quinone oxidoreductase Tax=CG_Rhodocyc_01
sqr; sulfide:quinone oxidoreductase
cg2_3.0_scaffold_1056_c_7
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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6407..7744
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376FFF7 rbh
sulfur oxidation protein, flavocytochrome c Tax=CG_Rhodocyc_01
sulfur oxidation protein, flavocytochrome C
cg2_3.0_scaffold_1056_c_8
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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7794..8495
DNA (702bp) protein (234aa)
rieske (2fe-2S) iron-sulfur domain Tax=CG_Rhodocyc_01
soxF; Rieske-I iron sulfur protein id=12496594 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
rieske (2fe-2S) iron-sulfur domain
cg2_3.0_scaffold_1056_c_9
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8505..9050)
DNA (546bp) protein (182aa)
Glycine cleavage system transcriptional repressor n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9Y6_9PROT rbh
glycine cleavage system transcriptional repressor Tax=CG_Rhodocyc_01
glycine cleavage system transcriptional repressor
cg2_3.0_scaffold_1056_c_10
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9220..9414
DNA (195bp) protein (65aa)
INTERPRO: probable Peptidase, eukaryotic cysteine peptidase active site n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P611_AROAE rbh
peptidase cysteine peptidase active site Tax=CG_Rhodocyc_01
peptidase cysteine peptidase active site
cg2_3.0_scaffold_1056_c_11
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9443..10189
DNA (747bp) protein (249aa)
bzdZ; dehydrogenase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=CG_Rhodocyc_01
Putative dehydrogenase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0M8_AROAE rbh
bzdZ; dehydrogenase
cg2_3.0_scaffold_1056_c_12
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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10382..11572
DNA (1191bp) protein (397aa)
glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=CG_Rhodocyc_01
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K462_9PROT rbh
glutaryl-CoA dehydrogenase
cg2_3.0_scaffold_1056_c_13
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11619..12494
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Arhodomonas aquaeolei RepID=UPI000368B255 rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CG_Rhodocyc_01
inner-membrane translocator
cg2_3.0_scaffold_1056_c_14
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12497..13420
DNA (924bp) protein (308aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00034C1385 rbh
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=CG_Rhodocyc_01
inner-membrane translocator
cg2_3.0_scaffold_1056_c_15
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13422..14180
DNA (759bp) protein (253aa)
livG; High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) (EC:3.6.3.-)
ABC transporter ATP-binding protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00034CF9EB rbh
ABC transporter related; K01995 branched-chain amino acid transport system ATP-binding protein Tax=CG_Rhodocyc_01
cg2_3.0_scaffold_1056_c_16
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14185..15504
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000370BEA9 rbh
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=CG_Rhodocyc_01
ABC transporter
cg2_3.0_scaffold_1056_c_17
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15551..16858
DNA (1308bp) protein (436aa)
paaK; phenylacetyl-CoA-ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=CG_Rhodocyc_01
Phenylacetyl-CoA-ligase n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CNP4_9BURK rbh
anaerobic phenylacetate CoA ligase
cg2_3.0_scaffold_1056_c_18
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16916..19240)
DNA (2325bp) protein (775aa)
Putative tungsten-containing aldehyde ferredoxin oxidoreductase (AOR-1) n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0J8_AROAE rbh
tungsten-containing aldehyde ferredoxin oxidoreductase (AOR-1) Tax=CG_Rhodocyc_01
tungsten-containing aldehyde ferredoxin oxidoreductase (AOR-1)
cg2_3.0_scaffold_1056_c_19
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19346..19813)
DNA (468bp) protein (156aa)
Transcriptional regulator, MarR family n=1 Tax=Azoarcus sp. KH32C RepID=H0PU92_9RHOO rbh
transcriptional regulator, MarR family Tax=CG_Rhodocyc_01
transcriptional regulator, MarR family
cg2_3.0_scaffold_1056_c_20
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20032..21072
DNA (1041bp) protein (347aa)
Predicted TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0J5_AROAE rbh
dctP; TRAP dicarboxylate transporter subunit DctP Tax=CG_Rhodocyc_01
dctP; TRAP dicarboxylate transporter subunit DctP
cg2_3.0_scaffold_1056_c_21
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21163..21684
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0J4_AROAE rbh
hypothetical protein Tax=CG_Rhodocyc_01
hypothetical protein
cg2_3.0_scaffold_1056_c_22
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21681..23003
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0J3_AROAE rbh
dctM; TRAP C4-dicarboxylate transport system permease DctM Tax=CG_Rhodocyc_01
dctM; TRAP C4-dicarboxylate transport system permease DctM
cg2_3.0_scaffold_1056_c_23
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23132..24301
DNA (1170bp) protein (390aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=CG_Rhodocyc_01
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZU77_9RHOO rbh
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
cg2_3.0_scaffold_1056_c_24
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24298..25137
DNA (840bp) protein (280aa)
2-oxoglutarate ferredoxin oxidoreductase, beta subunit n=1 Tax=Azoarcus sp. KH32C RepID=H0PU90_9RHOO rbh
korB; 2-oxoglutarate ferredoxin oxidoreductase, beta subunit Tax=CG_Rhodocyc_01
korB; 2-oxoglutarate ferredoxin oxidoreductase, beta subunit
cg2_3.0_scaffold_1056_c_25
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25268..26413
DNA (1146bp) protein (382aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47J46_DECAR rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=CG_Rhodocyc_01
extracellular ligand-binding receptor
cg2_3.0_scaffold_1056_c_26
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26516..27832
DNA (1317bp) protein (439aa)
phenylacetate-CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=CG_Rhodocyc_01
phenylacetate-CoA ligase (EC:6.2.1.30)
Phenylacetate-CoA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13AY7_RHOPS
Displaying 26 items

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