ggKbase home page

CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_1
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists

676..912
DNA (237bp) protein (79aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ18694.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
coiled-coil 15..36 id=87551 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
transcriptional regulator
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_2
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists

912..1214
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTZ7_9CHLB id=87549 bin=ACD58 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
PIN domain protein {ECO:0000313|EMBL:KKQ18693.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_3

Not on your lists

1739..1918
DNA (180bp) protein (60aa)
hypothetical protein id=3363 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE16081.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_4
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

Not on your lists


3293..5830
DNA (2538bp) protein (846aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
leucyl-tRNA synthetase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D71 rbh
Tax=BJP_IG2158_OD1_28_51
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_5
GWA1_Berkelbacteria_39_10_partial, Berkelbacteria, Bacteria

Not on your lists

6207..6662
DNA (456bp) protein (152aa)
N utilization substance protein B homolog id=3940351 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
N utilization substance protein B-like protein {ECO:0000313|EMBL:KKQ90935.1}; TaxID=1618332 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_39_10.;"
putative transcription termination factor
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_6
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists

6643..7344
DNA (702bp) protein (234aa)
Ribonuclease 3 id=3940350 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria) rbh
Ribonuclease 3
Tax=RBG_13_Berkelbacteria_40_8_curated
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_7
GWE1_Berkelbacteria_39_12, Berkelbacteria, Bacteria

Not on your lists

comp(7333..8040)
DNA (708bp) protein (236aa)
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX); K02616 phenylacetic acid degradation operon negative regulatory protein id=15189587 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
Tax=GWE1_Berkelbacteria_39_12
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_8

Not on your lists

comp(8327..9349)
DNA (1023bp) protein (341aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] id=86445 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein {ECO:0000313|EMBL:EKD56661.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_9
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(9342..10748)
DNA (1407bp) protein (469aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036D2186
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_10
Berkelbacteria bacterium GW2011_GWB1_38_5, Berkelbacteria, Bacteria

Not on your lists

comp(10789..12717)
DNA (1929bp) protein (643aa)
pheT; phenylalanyl-tRNA synthetase subuit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit id=3940346 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria) rbh
Phenylalanine-tRNA ligase beta subunit {ECO:0000313|EMBL:KKQ74641.1}; TaxID=1618336 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWB1_38_5.;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_11
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists


comp(12725..13417)
DNA (693bp) protein (231aa)
Phenylalanine--tRNA ligase alpha subunit id=3940345 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
pheS; phenylalanyl-tRNA synthetase subunit alpha
Tax=RBG_13_Berkelbacteria_40_8_curated
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_12

Not on your lists

comp(13420..13788)
DNA (369bp) protein (123aa)
seg 91..101 id=86531 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56262.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_13
GWA1_Berkelbacteria_39_10_partial, Berkelbacteria, Bacteria

Not on your lists

comp(13785..14123)
DNA (339bp) protein (113aa)
Ribosome-binding factor A id=3940343 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
Ribosome-binding factor A {ECO:0000313|EMBL:KKQ90943.1}; TaxID=1618332 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_39_10.;"
ribosome-binding factor A
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_14

Not on your lists

comp(14125..14691)
DNA (567bp) protein (189aa)
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] id=8826 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE10847.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ferredoxin
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_15
Thermotoga petrophila, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists


comp(14657..15055)
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) RepID=RS9_THEP1
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000255|HAMAP-Rule:MF_00532}; TaxID=390874 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995).;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_16
Marinitoga piezophila, Marinitoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists


comp(15045..15431)
DNA (387bp) protein (129aa)
50S ribosomal protein L13 n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J541_MARPK
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=443254 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Marinitoga.;" source="Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3).;"
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_17
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists


comp(15394..15807)
DNA (414bp) protein (138aa)
50S ribosomal protein L17 n=1 Tax=uncultured bacterium RepID=K2AIS8_9BACT
rplQ; 50S ribosomal protein L17
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_18

Not on your lists

comp(15826..16743)
DNA (918bp) protein (306aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=86570 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:EKD56272.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EKD56272.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DNA-directed RNA polymerase subunit alpha
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_19
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists


comp(16761..17345)
DNA (585bp) protein (195aa)
30S ribosomal protein S4 n=1 Tax=uncultured bacterium RepID=K1ZPV2_9BACT
30S ribosomal protein S4 {ECO:0000313|EMBL:KKQ18232.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
30S ribosomal protein S4
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_20
CG_CPR17-01, CG_CPR17, Bacteria

Not on your lists


comp(17345..17734)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 id=3158425 bin=GWC1_CPR2_39_9 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
rpsK; 30S ribosomal protein S11
Tax=CG_CPR17-01
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_21
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists


comp(17750..18136)
DNA (387bp) protein (129aa)
30S ribosomal protein S13 {ECO:0000313|EMBL:KKQ18230.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
30S ribosomal protein S13 id=3940336 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
30S ribosomal protein S13
CG_SAG_2014_w16S_AYXPP_9_length_18978_cov_50.1946_ID_1945_22
Moraxella catarrhalis, Moraxella, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18283..18501)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=11 Tax=Moraxella catarrhalis RepID=D5VCV5_MORCR
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=857573 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Moraxella.;" source="Moraxella catarrhalis CO72.;"
Displaying 22 items

View Taxonomy