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CG_2015-19_scaffold_4173

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG_2015-19_scaffold_4173_1
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


comp(140..442)
DNA (303bp) protein (101aa)
50S ribosomal protein L23P bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
50S ribosomal protein L23P
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_2
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


comp(432..1328)
DNA (897bp) protein (299aa)
50S ribosomal protein L4 Tax=uncultured archaeon RepID=D1JEA6_9ARCH
rpl4lp; 50S ribosomal protein L4
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_3
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(1321..2031)
DNA (711bp) protein (237aa)
30S ribosomal protein S4e Tax=nanoarchaeote Nst1 RepID=R1FU02_9ARCH
30S ribosomal protein S4e
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_4
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


comp(2028..2588)
DNA (561bp) protein (187aa)
50S ribosomal protein L24P; K02895 large subunit ribosomal protein L24 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
50S ribosomal protein L24P
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_5
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

2671..3075
DNA (405bp) protein (135aa)
Replication factor C large subunit Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AJZ8_METOI
Replication factor C large subunit
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_6
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

3068..3730
DNA (663bp) protein (221aa)
rfcL; replication factor C large subunit
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_7
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(3739..4218)
DNA (480bp) protein (160aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_8
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(4474..6864)
DNA (2391bp) protein (797aa)
AAA family ATPase, CDC48 subfamily Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BB37_METIK
ATPase AAA
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_9
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(7108..7449)
DNA (342bp) protein (114aa)
Translation initiation factor 1A Tax=Methanocaldococcus RepID=IF1A_METJA bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation initiation factor 1A
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_10
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


comp(7562..7783)
DNA (222bp) protein (74aa)
hypothetical protein Tax=Sulfolobales archaeon Acd1 RepID=UPI00038084EF
50S ribosomal protein L24
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_11
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


7867..8460
DNA (594bp) protein (198aa)
30S ribosomal protein S7 Tax=Thermogladius cellulolyticus (strain 1633) RepID=I3TDW1_THEC1
30S ribosomal protein S7
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_12
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


8510..9466
DNA (957bp) protein (319aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037EA6E5
50S ribosomal protein L3
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_13
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

9581..9790
DNA (210bp) protein (70aa)
hypothetical protein
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_14
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

9792..10325
DNA (534bp) protein (178aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_15
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

10378..12138
DNA (1761bp) protein (587aa)
Cytochrome c biogenesis protein, transmembrane region bin=GWF2_CPR3_35_18 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_CPR3_35_18 organism_group=CPR3
cytochrome c biogenesis protein, transmembrane region
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_16
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

12140..12568
DNA (429bp) protein (143aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_trna_2
unknown

Not on your lists

comp(12638..12709)
DNA (72bp)
transferRNA Ala
CG_2015-19_scaffold_4173_16S_1
unknown

Not on your lists

comp(13024..14481)
DNA (1458bp)
16S ribosomal RNA (16S rRNA)
CG_2015-19_scaffold_4173_17
unknown

Not on your lists

comp(14562..14759)
DNA (198bp) protein (66aa)

This feature has no annotations

CG_2015-19_scaffold_4173_18
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

14797..14973
DNA (177bp) protein (59aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_19
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(15338..15568)
DNA (231bp) protein (77aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_20
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(15575..16246)
DNA (672bp) protein (224aa)
Translation initiation factor 6 Tax=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) RepID=D7D9N2_STAHD
translation initiation factor eIF-6
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_21
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(16422..16952)
DNA (531bp) protein (177aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035ECDBB
ThiJ/PfpI domain-containing protein
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_22
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


17018..17494
DNA (477bp) protein (159aa)
30S ribosomal protein S17P Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY
SSU ribosomal protein S11e (S17p)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_23
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

17735..19033
DNA (1299bp) protein (433aa)
Metallophosphoesterase Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXV9_METFV bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Metallophosphoesterase
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_24
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

19070..19351
DNA (282bp) protein (94aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_25
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

19373..19558
DNA (186bp) protein (62aa)
Tax=CG_CPArch01-01
CG_2015-19_scaffold_4173_trna_1
unknown

Not on your lists

comp(19437..19510)
DNA (74bp)
transferRNA Pro
CG_2015-19_scaffold_4173_26
Altiarchaeum hamiconexum, Altiarchaeum, Altiarchaeales, Euryarchaeota, Archaea

Not on your lists

19638..19724
DNA (87bp) protein (29aa)
Tax=Altiarchaeum hamiconexum
Displaying 29 items

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