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cn_combo_scaffold_2125

Alias: CNBR_UNK_341b

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2125_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..311
DNA (309bp) protein (103aa)
Sir2 family transcriptional regulator; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Transcriptional regulator, Sir2 family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC12_PHEZH
Sir2 family transcriptional regulator
cn_combo_scaffold_2125_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

375..1382
DNA (1008bp) protein (336aa)
TRAP transporter solute receptor TAXI family protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q806_9RHIZ
TRAP transporter solute receptor TAXI family protein; K07080 Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
TRAP transporter solute receptor, TAXI family
cn_combo_scaffold_2125_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1412..2146
DNA (735bp) protein (245aa)
oxidoreductase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036C8D4B
putative 3-oxoacyl-[acyl-carrier-protein] reductase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
short-chain dehydrogenase/reductase
cn_combo_scaffold_2125_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2149..2775
DNA (627bp) protein (209aa)
kdgA, SCC30.06; KHG/KDPG aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curat
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (EC:4.1.2.14)
KHG/KDPG aldolase n=1 Tax=Streptomyces griseoaurantiacus M045 RepID=F3NB68_9ACTO
cn_combo_scaffold_2125_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2831..3838
DNA (1008bp) protein (336aa)
Conserved hypothetical signal peptide protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AA22_COLFT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
cn_combo_scaffold_2125_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3851..4849
DNA (999bp) protein (333aa)
Fatty acid hydroxylase superfamily protein 1 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T0J1_ALCXX
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
membrane protein
cn_combo_scaffold_2125_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4803..5732)
DNA (930bp) protein (310aa)
Ribokinase domain-containing protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SXL4_RHIET
ribokinase domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ribokinase domain-containing protein
cn_combo_scaffold_2125_8
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5844..7652
DNA (1809bp) protein (603aa)
L-arabonate dehydratase AraC {ECO:0000313|EMBL:KDM68635.1}; EC=4.2.1.25 {ECO:0000313|EMBL:KDM68635.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobac
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FUN4_ACICJ
cn_combo_scaffold_2125_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7656..8270)
DNA (615bp) protein (205aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
cn_combo_scaffold_2125_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8919..10043
DNA (1125bp) protein (375aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Glaciecola arctica BSs20135 RepID=K6Y273_9ALTE
Rieske (2Fe-2S) domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Rieske (2Fe-2S) domain-containing protein
cn_combo_scaffold_2125_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10052..10930)
DNA (879bp) protein (293aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C4L9_HYPNA
short chain dehydrogenase/reductase family protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
short chain dehydrogenase/reductase family protein
cn_combo_scaffold_2125_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11052..11570
DNA (519bp) protein (173aa)
Putative cold-shock DNA-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXE8_PARL1
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
cold-shock protein
cn_combo_scaffold_2125_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11578..12519)
DNA (942bp) protein (314aa)
ABC transporter, periplasmic n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7D0_9RHOB
tauA; sulfonate/nitrate/taurine transport system substrate-binding protein; K15598 putative hydroxymethylpyrimidine transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacte
ABC transporter periplasmic components. Substrate unknown
cn_combo_scaffold_2125_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12522..13259)
DNA (738bp) protein (246aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RR46_9PROT
tauC; sulfonate/nitrate/taurine transport system permease; K15599 putative hydroxymethylpyrimidine transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter permease protein. Substrate unknown
cn_combo_scaffold_2125_15
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13379..13993
DNA (615bp) protein (205aa)
hypothetical protein Tax=RBG_16_Alphaproteobacteria_64_48_curated
cn_combo_scaffold_2125_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14069..14632
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALS8_AZOBR
conserved exported protein of unknown function Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
conserved exported protein of unknown function
cn_combo_scaffold_2125_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14637..15296)
DNA (660bp) protein (220aa)
Caffeoyl-CoA O-methyltransferase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E7W1_9GAMM
O-methyltransferase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
O-methyltransferase
cn_combo_scaffold_2125_18
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15374..17041
DNA (1668bp) protein (556aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=371731 spe
ftfL; formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S3I4_9RHOB
cn_combo_scaffold_2125_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17043..17933
DNA (891bp) protein (297aa)
isomerase (EC:5.1.-.-) Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Phenazine biosynthesis protein PhzF family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRH7_9RHIZ
hypothetical protein
cn_combo_scaffold_2125_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17935..18342)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCG4_PHEZH
hypothetical protein; K09966 hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
cn_combo_scaffold_2125_trna_1
unknown

Not on your lists

18429..18502
DNA (74bp)
transferRNA
cn_combo_scaffold_2125_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18540..18842
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000370D150
ETC complex subunit I Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ETC complex I subunit
cn_combo_scaffold_2125_trna_2
unknown

Not on your lists

18908..18981
DNA (74bp)
transferRNA
cn_combo_scaffold_2125_22
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19134..21425
DNA (2292bp) protein (764aa)
TonB-dependent siderophore receptor n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EGV5_9BURK
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EKZ98772.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupria
outer membrane receptor, TonB-dependent
cn_combo_scaffold_2125_23
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21445..22128
DNA (684bp) protein (228aa)
PKHD-type hydroxylase GWL_28030 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
PKHD-type hydroxylase GWL_28030 n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CQ82_9BURK
piuC; Iron-uptake factor PiuC
cn_combo_scaffold_2125_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22128..22820
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K369_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74600.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
PepSY-associated TM helix domain-containing protein
cn_combo_scaffold_2125_25
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22830..23594
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035DB374
tonB; periplasmic protein/biopolymer transport
Periplasmic protein/ biopolymer transport {ECO:0000313|EMBL:ABM96671.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petrole
cn_combo_scaffold_2125_26
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23606..24340
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036CED71
Biopolymer transport protein ExbB {ECO:0000313|EMBL:EWS52795.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
MotA/TolQ/ExbB proton channel
cn_combo_scaffold_2125_27
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24353..24769
DNA (417bp) protein (139aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SM84_METPP
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD {ECO:0000313|EMBL:EWS52794.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
cn_combo_scaffold_2125_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24779..25405)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HN26_9RHIZ
lysine exporter protein LysE/YggA Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
lysine exporter protein LysE/YggA
Displaying items 1-30 of 31 in total

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