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cn_combo_scaffold_3980

Alias: CNBR_UNK_398

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_3980_1
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..1176)
DNA (1176bp) protein (392aa)
Conjugation TrbI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT25_ALIDB
Conjugation TrbI-like protein {ECO:0000313|EMBL:KCV66858.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bron
conjugative transfer protein TrbI
cn_combo_scaffold_3980_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1179..2183)
DNA (1005bp) protein (335aa)
P-type conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P833_PSEAI
p-type conjugative transfer protein TrbG {ECO:0000313|EMBL:GAO26453.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="
p-type conjugative transfer protein trbg
cn_combo_scaffold_3980_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2180..2884)
DNA (705bp) protein (235aa)
Conjugal transfer protein n=2 Tax=Comamonadaceae RepID=A9BTR6_DELAS
Conjugal transfer protein TrbF {ECO:0000313|EMBL:GAO21052.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliph
conjugal transfer protein TrbF
cn_combo_scaffold_3980_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2915..4282)
DNA (1368bp) protein (456aa)
P-type conjugative transfer protein TrbL n=1 Tax=Ralstonia pickettii (strain 12J) RepID=B2UAH9_RALPJ
conjugal transfer protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AIJ47387.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testo
cn_combo_scaffold_3980_5
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4294..5049)
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MII9_ACIET
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KIL06316.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas st
conjugal transfer protein Trbj
cn_combo_scaffold_3980_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5046..7517)
DNA (2472bp) protein (824aa)
VirB4 family type IV secretion/conjugal transfer ATPase n=4 Tax=Pseudomonas aeruginosa RepID=N2D3B7_PSEAI
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KIZ32666.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas st
type IV transport system protein VirB
cn_combo_scaffold_3980_7
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7527..7778)
DNA (252bp) protein (84aa)
Conjugal transfer protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HVM0_PSEUO
putative conjugal transfer trbD transmembrane protein
Type IV secretory pathway, VirB3-like protein {ECO:0000313|EMBL:KCB37746.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source=
cn_combo_scaffold_3980_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7808..8191)
DNA (384bp) protein (128aa)
TrbC-like protein n=3 Tax=Pseudomonas aeruginosa RepID=U8YSE5_PSEAI
conjugal transfer TrbC transmembrane protein
Type IV secretory pathway protein {ECO:0000313|EMBL:ACD39031.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
cn_combo_scaffold_3980_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8188..9237)
DNA (1050bp) protein (350aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV34_ALIDB
p-type conjugative transfer atpase trbb
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ADV00566.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicyclip
cn_combo_scaffold_3980_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9234..9710)
DNA (477bp) protein (159aa)
Hypothetical ribbon-helix-helix harboring protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XW90_RALSO
CopG/DNA-binding domain-containing protein {ECO:0000313|EMBL:GAO26444.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source
hypothetical protein
cn_combo_scaffold_3980_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9707..11704)
DNA (1998bp) protein (666aa)
Conjugal transfer coupling protein TraG n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WC06_PSEAI
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:GAO26443.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="A
conjugal transfer protein TraG
cn_combo_scaffold_3980_12
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11928..12188)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C091_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22007.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp
putative lipoprotein
cn_combo_scaffold_3980_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12188..13111)
DNA (924bp) protein (308aa)
Putative LysR family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0C090_9BURK
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:EHL22006.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source=
LysR family transcriptional regulator
cn_combo_scaffold_3980_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13137..14687)
DNA (1551bp) protein (517aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI3_ALIDB
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:GAO21820.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphil
heavy metal efflux pump, czca family
Displaying 14 items

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