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cn_combo_scaffold_4374

Alias: CNBR_UNK_411

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_4374_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..373
DNA (372bp) protein (124aa)
CbbQ/NirQ/NorQ domain-containing protein; K04748 nitric oxide reductase NorQ protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
CbbQ/NirQ/NorQ domain-containing protein; K04748 nitric oxide reductase NorQ protein id=12493635 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cbbQ2; rubisco activation protein CbbQ
cn_combo_scaffold_4374_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

383..2713
DNA (2331bp) protein (777aa)
Rubisco activation protein cbbO n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFL7_THIDA
cbbO2; rubisco activation protein cbbO rbh
Rubisco activation protein cbbO {ECO:0000313|EMBL:AAZ98589.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thioba
cn_combo_scaffold_4374_3
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2745..3083
DNA (339bp) protein (113aa)
PhnA protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13NX0_BURXL
PhnA protein
PhnA protein {ECO:0000313|EMBL:ABE34219.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (stra
cn_combo_scaffold_4374_4
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3460..4377)
DNA (918bp) protein (306aa)
LysR family transcriptional regulator id=12496248 bin=THIO_MID species=unknown genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHK78649.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodo
cn_combo_scaffold_4374_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4654..6075
DNA (1422bp) protein (474aa)
rbcL; Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (RuBisCO large subunit) (EC:4.1.1.39) id=12496249 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain {ECO:0000255|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000255|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000255|HAMAP-Rule:MF_01338};; TaxID=7
Type IA. Rose Kantor (6/30/14)
cn_combo_scaffold_4374_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6190..6516
DNA (327bp) protein (109aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] id=12496250 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cbbS; Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (RubisCO) (EC:4.1.1.39)
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (RubisCO) {ECO:0000313|EMBL:CAZ86892.1}; EC=4.1.1.39 {ECO:0000313|EMBL:CAZ86892.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betap
cn_combo_scaffold_4374_7
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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6640..9354
DNA (2715bp) protein (905aa)
Carboxysome structural polypeptide n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQK2_THIA3
csoS2; Carboxysome structural polypeptide
Carboxysome shell protein CsoS2 {ECO:0000313|EMBL:ABI59073.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosom
cn_combo_scaffold_4374_8
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9392..10876
DNA (1485bp) protein (495aa)
carboxysome shell carbonic anhydrase id=12496252 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carboxysome shell carbonic anhydrase
Carboxysome shell carbonic anhydrase {ECO:0000313|EMBL:ADG29531.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strai
cn_combo_scaffold_4374_9
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10904..11161
DNA (258bp) protein (86aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AHV7_NITEC
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml {ECO:0000313|EMBL:ABI59075.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomo
cn_combo_scaffold_4374_10
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11161..11406
DNA (246bp) protein (82aa)
Carboxysome polypeptide n=2 Tax=Thiomonas RepID=D6CQK5_THIA3
carboxysome peptide B
Carboxysome peptide B {ECO:0000313|EMBL:ADG29533.1}; Carboxysome polypeptide {ECO:0000313|EMBL:AAD02450.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomona
cn_combo_scaffold_4374_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11508..11804
DNA (297bp) protein (99aa)
microcompartments protein id=12496255 bin=THIO_MID species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
csoS1a; Major carboxysome shell protein
Major carboxysome shell protein {ECO:0000313|EMBL:CAZ86897.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strai
cn_combo_scaffold_4374_12

Not on your lists

11851..12147
DNA (297bp) protein (99aa)
Microcompartments protein n=1 Tax=uncultured prokaryote RepID=M1GLU3_9ZZZZ
carbon dioxide concentrating mechanism/carboxysome shell protein
Microcompartments protein {ECO:0000313|EMBL:AGE14131.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
cn_combo_scaffold_4374_13
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12193..12531
DNA (339bp) protein (113aa)
Carboxysome structural polypeptide n=2 Tax=Thiomonas RepID=D6CQK8_THIA3
microcompartments protein
Carboxysome structural polypeptide {ECO:0000313|EMBL:CAZ86899.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (st
cn_combo_scaffold_4374_14
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12544..12975
DNA (432bp) protein (144aa)
ferritin Dps family protein; K03594 bacterioferritin id=12496256 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Bfr, Bacterioferritin {ECO:0000313|EMBL:KFZ88939.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
Ferritin, Dps family protein
cn_combo_scaffold_4374_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12968..13237
DNA (270bp) protein (90aa)
putative Pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative Pterin-4a-carbinolamine dehydratase {ECO:0000313|EMBL:CAZ86901.1}; EC=4.2.1.96 {ECO:0000313|EMBL:CAZ86901.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
hypothetical protein id=12496257 bin=THIO_MID species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cn_combo_scaffold_4374_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13239..13382
DNA (144bp) protein (48aa)
Cobyrinic acid ac-diamide synthase n=2 Tax=Thiomonas RepID=D5X341_THIK1
putative Cobyrinic acid a,c-diamide synthase cbiA
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ADG29539.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain
Displaying 16 items

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