ggKbase home page

cn_combo_scaffold_4849

Alias: CNBR_UNK_376

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_4849_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..412)
DNA (411bp) protein (137aa)
RNA polymerase sigma 70 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000366D051
RNA polymerase factor sigma-32
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacter
cn_combo_scaffold_4849_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

999..2807
DNA (1809bp) protein (603aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidi
Phosphomethylpyrimidine synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ25_9GAMM
thiamine biosynthesis protein ThiC
cn_combo_scaffold_4849_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2804..3772
DNA (969bp) protein (323aa)
Glycine oxidase ThiO n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ26_9GAMM
Glycine oxidase ThiO {ECO:0000313|EMBL:EIL89317.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulv
glycine oxidase ThiO
cn_combo_scaffold_4849_4
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3772..3969
DNA (198bp) protein (66aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LRV1_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KIX18867.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361
thiamine biosynthesis protein ThiS
cn_combo_scaffold_4849_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3971..4741
DNA (771bp) protein (257aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
Thiazole synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4N3_STAND
thiazole biosynthesis protein
cn_combo_scaffold_4849_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4738..5346
DNA (609bp) protein (203aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1163407 species="B
Thiamin-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU5_9GAMM
cn_combo_scaffold_4849_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5343..6095
DNA (753bp) protein (251aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZU7_9GAMM
Bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EIL92738.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadale
cn_combo_scaffold_4849_8
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6082..6798)
DNA (717bp) protein (239aa)
ung; uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27] Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Uracil-DNA glycosylase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z2H4_XANCT
Ung; uracil-DNA glycosylase
cn_combo_scaffold_4849_9
unknown

Not on your lists

comp(6804..6992)
DNA (189bp) protein (63aa)

This feature has no annotations

cn_combo_scaffold_4849_10
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6997..7758)
DNA (762bp) protein (254aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-meth
ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E7659C
ubiquinone/menaquinone biosynthesis methyltransferase
cn_combo_scaffold_4849_11
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7920..8738
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K622_AZOSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL94277.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).
cn_combo_scaffold_4849_12
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8742..11138)
DNA (2397bp) protein (799aa)
restriction endonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
Restriction endonuclease, putative n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5ECU3_GEOBB
restriction endonuclease
cn_combo_scaffold_4849_13
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11135..12133)
DNA (999bp) protein (333aa)
Adenosine monophosphate-protein transferase {ECO:0000256|PIRNR:PIRNR038925}; EC=2.7.7.n1 {ECO:0000256|PIRNR:PIRNR038925};; AMPylator {ECO:0000256|PIRNR:PIRNR038925}; TaxID=1346287 species="Bacteria; P
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ARh3 RepID=UPI00037641F9
hypothetical protein
cn_combo_scaffold_4849_14
unknown

Not on your lists

comp(12138..12230)
DNA (93bp) protein (31aa)

This feature has no annotations

cn_combo_scaffold_4849_15
CG_Roizman_01, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(12452..13552)
DNA (1101bp) protein (367aa)
restriction modification system DNA specificity domain-containing protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3] Tax=CG_Roizman_01
Restriction modification system DNA specificity domain protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I121_RHOVT
restriction modification system DNA specificity domain-containing protein
cn_combo_scaffold_4849_16
CG_Gallio_03, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13549..15003)
DNA (1455bp) protein (485aa)
hsdM2; type I restriction-modification system, methyltransferase subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72] Tax=CG_Gallio_03
Type I restriction-modification system, methyltransferase subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGE4_9BACT
hsdM2; type I restriction-modification system, methyltransferase subunit
cn_combo_scaffold_4849_17
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15134..16390)
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=391597 specie
Transcription termination factor Rho n=1 Tax=Limnobacter sp. MED105 RepID=A6GQQ0_9BURK
rho; transcription termination factor Rho
cn_combo_scaffold_4849_18
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16681..17001)
DNA (321bp) protein (107aa)
Thioredoxin 1 n=34 Tax=pseudomallei group RepID=Q3JRN4_BURP1
trxA; thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=536230 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkhold
Displaying 18 items

View Taxonomy