ggKbase home page

cn_combo_scaffold_5445

Alias: CNBR_UNK_360

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_5445_1
unknown

Not on your lists

2..94
DNA (93bp) protein (31aa)

This feature has no annotations

cn_combo_scaffold_5445_2
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140..586)
DNA (447bp) protein (149aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO40730.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
cn_combo_scaffold_5445_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

930..1349
DNA (420bp) protein (140aa)
hypothetical protein, partial n=1 Tax=Anaerococcus sp. PH9 RepID=UPI00037CC182
dfrA Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
dfrA
cn_combo_scaffold_5445_4
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1361..1981)
DNA (621bp) protein (207aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LEK6_RALME
uracil-DNA glycosylase
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ABF11420.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstoni
cn_combo_scaffold_5445_5
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2285..2566
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Anaerococcus sp. PH9 RepID=UPI00031A2517
acpP; acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria
cn_combo_scaffold_5445_6
Pseudomonas moraviensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2470..2928)
DNA (459bp) protein (153aa)
DoxX family protein n=1 Tax=Pseudomonas moraviensis R28 RepID=V8R9G9_9PSED
DoxX
DoxX family protein {ECO:0000313|EMBL:ETF08527.1}; TaxID=1395516 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas moraviens
cn_combo_scaffold_5445_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2925..3698)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IEF8_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF89484.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulino
cn_combo_scaffold_5445_8
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3682..4563)
DNA (882bp) protein (294aa)
UPF0276 protein PSE_4787 n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PKX9_PSEUV
uncharacterized protein conserved in bacteria, NMA0228-like
UPF0276 protein GL4_3120 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitep
cn_combo_scaffold_5445_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4578..4868)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI000368B7E5
Uncharacterized protein {ECO:0000313|EMBL:EKE72139.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum
signal peptide protein
cn_combo_scaffold_5445_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5035..5583
DNA (549bp) protein (183aa)
SigD-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL65_9BRAD
SigD-like protein {ECO:0000313|EMBL:EGP07718.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
RNA polymerase sigma factor
cn_combo_scaffold_5445_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5580..6215
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035F6CDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDP75814.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="E
cn_combo_scaffold_5445_12

Not on your lists

comp(6229..6555)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL87381.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cn_combo_scaffold_5445_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6878..8095)
DNA (1218bp) protein (406aa)
Formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Formyl-CoA transferase (EC:2.8.3.16)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA015-N04 RepID=UPI00037CDA81
cn_combo_scaffold_5445_14
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8283..9269
DNA (987bp) protein (329aa)
Secreted protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KU54_9BURK
Secreted protein {ECO:0000313|EMBL:EGI76604.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19
hypothetical protein
cn_combo_scaffold_5445_15
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9300..9536)
DNA (237bp) protein (79aa)
bacteriocin n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003828CB6
OmpA family protein
Uncharacterized protein {ECO:0000313|EMBL:KJV09682.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
cn_combo_scaffold_5445_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9624..10514)
DNA (891bp) protein (297aa)
RNA polymerase sigma 70 n=1 Tax=Rhizobium leguminosarum RepID=UPI00037C5E31
RNA polymerase, sigma-24 subunit, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACS59743.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium g
cn_combo_scaffold_5445_17
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10634..10969
DNA (336bp) protein (112aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; S
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2H3_CONWI
alkylhydroperoxidase
cn_combo_scaffold_5445_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11176..11985
DNA (810bp) protein (270aa)
Putative phytanoyl-CoA dioxygenase n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVG9_COMT2
putative phytanoyl-CoA dioxygenase
Putative phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:ACY30905.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas te
cn_combo_scaffold_5445_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12022..12984
DNA (963bp) protein (321aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVH0_COMT2
extracellular solute-binding protein, family 3 rbh
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:ACY30906.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="
cn_combo_scaffold_5445_20
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13049..13825
DNA (777bp) protein (259aa)
Taurine transport system permeaseprotein tauC n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVH1_COMT2
taurine transport system permeaseprotein tauC
Taurine transport system permeaseprotein tauC {ECO:0000313|EMBL:ACY30907.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="C
cn_combo_scaffold_5445_21
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13822..14604
DNA (783bp) protein (261aa)
Taurine transport ATP-binding protein tauB n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IVH2_COMT2
taurine transport ATP-binding protein tauB
Taurine transport ATP-binding protein tauB {ECO:0000313|EMBL:ACY30908.1}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Coma
cn_combo_scaffold_5445_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14613..15338
DNA (726bp) protein (242aa)
Transcriptional regulator, histidine utilization repressor, GntR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V090_VARPE
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37013.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
GntR family transcriptional regulator
cn_combo_scaffold_5445_23
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15348..16277)
DNA (930bp) protein (310aa)
UPI0003CF9EDC related cluster n=1 Tax=unknown RepID=UPI0003CF9EDC
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:CDN58128.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
cn_combo_scaffold_5445_24
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16380..17540
DNA (1161bp) protein (387aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWK6_9RHIZ
ThiJ/PfpI domain protein
Transcriptional regulator {ECO:0000313|EMBL:KGD96984.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" so
cn_combo_scaffold_5445_25
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17537..18811
DNA (1275bp) protein (425aa)
UPI0003CF9F3F related cluster n=1 Tax=unknown RepID=UPI0003CF9F3F
Salicylate 1-monooxygenase {ECO:0000313|EMBL:KGD96983.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" s
Flavin-containing monooxygenase rbh
cn_combo_scaffold_5445_26
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18926..20161
DNA (1236bp) protein (412aa)
Amidohydrolase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EHH6_CAUCE
Amidohydrolase {ECO:0000313|EMBL:ENZ80667.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR3
amidohydrolase precursor
Displaying 26 items

View Taxonomy