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cn_combo_scaffold_3160

Alias: ERY14_46

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_3160_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..168
DNA (168bp) protein (56aa)
Endonuclease DDE n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HHS1_9SPHN
Endonuclease DDE {ECO:0000313|EMBL:EQA97123.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.
transposase for insertion sequence NGRIS-9
cn_combo_scaffold_3160_2
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(259..438)
DNA (180bp) protein (60aa)
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
cn_combo_scaffold_3160_3
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(435..1205)
DNA (771bp) protein (257aa)
beta-lactamase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D66EE6
beta-lactamase
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_3160_4
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1214..1990)
DNA (777bp) protein (259aa)
LuxR family transcriptional regulator n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003086A0C
LuxR family transcriptional regulator {ECO:0000313|EMBL:KEO87206.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source=
TatD-related deoxyribonuclease
cn_combo_scaffold_3160_5
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1990..3567)
DNA (1578bp) protein (526aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:
Methionine--tRNA ligase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC68_9SPHN
methionyl-tRNA synthetase rbh
cn_combo_scaffold_3160_6
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3560..4516)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003058B8D
DNA polymerase III subunit delta'
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
cn_combo_scaffold_3160_7
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4513..5157)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D3D16C
thymidylate kinase
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_3160_8
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5151..6341)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FF09D9
D-alanyl-D-alanine carboxypeptidase
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
cn_combo_scaffold_3160_9
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6395..7348)
DNA (954bp) protein (318aa)
Lytic murein transglycosylase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WC69_9SPHN
Lytic transglycosylase {ECO:0000313|EMBL:KEO87201.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter
lytic murein transglycosylase
cn_combo_scaffold_3160_trna_1
unknown

Not on your lists

7534..7620
DNA (87bp)
transferRNA
cn_combo_scaffold_3160_10
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7755..8876
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000361BB9D
hypothetical protein
Tax=BJP_08E140C01_Roseovarius_63_250
cn_combo_scaffold_3160_11
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8939..10357)
DNA (1419bp) protein (473aa)
dihydrolipoamide dehydrogenase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E664AC
pyruvate dehydrogenase complex, E3 component, lipoamidedehydrogenase
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_3160_12
unknown

Not on your lists

comp(10612..11205)
DNA (594bp) protein (198aa)

This feature has no annotations

cn_combo_scaffold_3160_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11175..12587)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E1A4C3
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:KEO98988.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythro
branched-chain alpha-keto acid dehydrogenase subunit E2
cn_combo_scaffold_3160_14
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12730..13161
DNA (432bp) protein (144aa)
universal stress protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000304B041
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
cn_combo_scaffold_3160_15
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13172..15460)
DNA (2289bp) protein (763aa)
ribonuclease R n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00036C1E35
exoribonuclease R
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
cn_combo_scaffold_3160_16
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15575..16921)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002ED1161
leucine aminopeptidase-related protein
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_3160_17
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16954..18063)
DNA (1110bp) protein (370aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
prolyl-tRNA synthetase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FD5C30
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
Displaying 18 items

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