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cn_combo_scaffold_5394

Alias: ERY14_129

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_5394_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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79..267
DNA (189bp) protein (63aa)
Flp/Fap pilin component n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F307_SPHCR
Flp/Fap pilin component {ECO:0000313|EMBL:EZP79659.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
Flp/Fap pilin component
cn_combo_scaffold_5394_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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345..710
DNA (366bp) protein (122aa)
TadE-like protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z7C0_SPHJU
TadE-like protein
TadE-like protein {ECO:0000313|EMBL:BAI98389.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum
cn_combo_scaffold_5394_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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979..1917
DNA (939bp) protein (313aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZMG2_9SPHN
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EJL20471.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
response regulator receiver protein
cn_combo_scaffold_5394_4
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2077..2658)
DNA (582bp) protein (194aa)
OmpA/MotB domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMV8_CAUST
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ADG11831.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source
cn_combo_scaffold_5394_5
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2777..3640)
DNA (864bp) protein (288aa)
UPI0003CFF491 related cluster n=1 Tax=unknown RepID=UPI0003CFF491
Membrane protein {ECO:0000313|EMBL:ESZ87113.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA1
membrane protein
cn_combo_scaffold_5394_6
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3979..4392
DNA (414bp) protein (138aa)
Response regulator receiver protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDN4_9SPHN
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:CCA90409.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="
cn_combo_scaffold_5394_7
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4389..5306
DNA (918bp) protein (306aa)
two-component system NtrC family C4-dicarboxylate transport sensor histidine kinase DctB (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCA90410.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphing
Two-component system, NtrC family,C4-dicarboxylate transport sensor histidine kinase DctB n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDN5_9SPHN
cn_combo_scaffold_5394_trna_1
unknown

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comp(5620..5707)
DNA (88bp)
transferRNA
cn_combo_scaffold_5394_8
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5996..7021
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002F995F2
peptidyl-prolyl cis-trans isomerase
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_5394_9
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7025..9115)
DNA (2091bp) protein (697aa)
GTP pyrophosphokinase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003087481
guanosine polyphosphate pyrophosphohydrolase
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_5394_10
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9179..9442
DNA (264bp) protein (88aa)
Transcriptional regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0G8X2_9SPHN
addiction module antidote
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_5394_11
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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9447..9836
DNA (390bp) protein (130aa)
Death-on-curing family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ET25_SPHCR
Death-on-curing protein {ECO:0000313|EMBL:KIY12861.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
death-on-curing family protein
cn_combo_scaffold_5394_12
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9862..10719)
DNA (858bp) protein (286aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
coproporphyrinogen III oxidase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00030543C9
Tax=BJP_IG2102_Porphyrobacter_62_18
cn_combo_scaffold_5394_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10906..10995
DNA (90bp) protein (30aa)
IS605 family transposase OrfB (EC:2.1.1.37)
Transposase, IS605 OrfB family {ECO:0000313|EMBL:ABQ28937.1}; EC=2.1.1.37 {ECO:0000313|EMBL:ABQ28937.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetoba
Transposase, IS605 OrfB family n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FTK5_ACICJ
Displaying 14 items

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